Job Description P77774 Confidence 71.82% Date Thu Jan 5 12:32:43 GMT 2012 Rank 152 Aligned Residues 185 % Identity 11% Template c1n7dA_ PDB info PDB header:lipid transport Chain: A: PDB Molecule:low-density lipoprotein receptor; PDBTitle: extracellular domain of the ldl receptor Resolution 3.70 Å

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		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.			.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.					.
Predicted Secondary structure																																																		.	.								.																		.	.	.	.
Query SS confidence																																																		.	.								.																		.	.	.	.
Query Sequence		A	V	V	G	G	D	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I	W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	.	.	N	G	V	V	F	A	L	.	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	.	.	.	.	W
Query Conservation																																																		.	.								.																		.	.	.	.
Alig confidence																																																		.	.								.																		.	.	.	.
Template Conservation
Template Sequence		L	D	T	E	V	A	S	N	R	I	Y	W	S	D	L	S	Q	R	M	I	C	S	T	Q	L	D	R	A	H	G	S	S	Y	D	T	V	I	S	R	D	I	P	D	G	L	A	V	D	W	I	H	S	N	I	Y	W	T	D	S	V	L	G	T	V	S	V	A	D	T	K	G	V	K	R	K	T	L	F	R	E
Template Known Secondary structure						T	T	T	T							T	T	T	T	S	B					S											B			S											S	S	S	B						T	T	T	S						B	S	S	S
Template Predicted Secondary structure
Template SS confidence
		411	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.		.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure																							.	.												.																														.
Query SS confidence																							.	.												.																														.
Query Sequence		K	R	E	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V	D	.	.	Q	N	D	R	V	M	A	L	T	I	D	.	G	G	V	T	L	W	T	Q	S	D	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	.	D	S	E	G	Y	L	H	W	I	N	V	E	D	G	R
Query Conservation																							.	.												.																														.
Alig confidence																							.	.												.																														.												.
Template Conservation																																																																														.
Template Sequence		Q	G	S	K	P	R	A	I	V	V	D	P	V	H	G	F	M	Y	W	T	D	W	G	T	P	A	K	I	K	K	G	G	L	N	G	V	D	I	Y	S	L	V	T	E	N	I	Q	W	P	N	G	I	T	L	D	L	L	S	G	R	L	Y	W	V	D	S	K	L	H	S	I	S	S	I	D	V	.	N	G	G
Template Known Secondary structure		S	S										S	S	S	S								S	S	S					B			S	S	S							S		S	S		S	S								T	T	T								T	T	T	T							S	.	S	S	S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.		570	.	.
		356	.	.	.	360	.	.	.	.	.	.	.	.			.	370	.	.	.	.	.	.	.	.	.	380	.	.		.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure															.	.															.
Query SS confidence															.	.															.
Query Sequence		F	V	A	Q	Q	K	V	D	S	S	G	F	Q	.	.	T	E	P	V	A	A	D	G	K	L	L	I	Q	A	.	K	D	G	T	V	Y	S	I	T	R
Query Conservation															.	.															.
Alig confidence															.	.															.
Template Conservation
Template Sequence		N	R	K	T	I	L	E	D	E	K	R	L	A	H	P	F	S	L	A	V	F	E	D	K	V	F	W	T	D	I	I	N	E	A	I	F	S	A	N	R
Template Known Secondary structure										S	S	S		S	S								T	T							S	T	T	T							T
Template Predicted Secondary structure
Template SS confidence
		573	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions