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Job DescriptionP77774
Confidence100.00%DateThu Jan 5 12:32:43 GMT 2012
Rank2Aligned Residues362
% Identity21%Templatec1kv9A_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:type ii quinohemoprotein alcohol dehydrogenase; PDBTitle: structure at 1.9 a resolution of a quinohemoprotein alcohol2 dehydrogenase from pseudomonas putida hk5
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   20.........30.........40. ........50.........60.........70.........80.........90.......
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Query Sequence  CSLFNSEEDVVKMSPLPTVENQ. . FTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSL
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Template Sequence  WLSHGRTYAEQRFSPLKQIDASNVRSLGLAWYMDLDNTRG. . . LEATPLFHDGVIYTSMSWSRVIAVDAASGKELWRYDP
Template Known Secondary structure  B
BTTBSTT





SS
TTTGGG
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TTGGGTTT



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   18.20.........30.........40.........50....... ..60.........70.........80.........90....
 
   98.100.........110.. .......120.........130.........140.........150 .........160.........170
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Query Sequence  AEKDGWFSKEPALLS. GGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGE. . . . . ALSRPVVSDGLVLIHTSNGQ.
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Template Sequence  EVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY
Template Known Secondary structure 


GGGGGG
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BT
TTSTTT


S
TTSS
B

S

TT

B
TTT
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   95....100.........110.........120.........130.........140.........150.........160.........170....
 
   171........180.........190. ........200.........210.....
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Query Sequence  . . . . . LQALNEADGAVKWTVNLDMPS. . . . . . . . . . . . . . . . . . . . . . . . . . . . LSLRGESAPTTAFGAAVVGGDNGR. .
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Template Sequence  GVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPW
Template Known Secondary structure 

B
TTT

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TTS

SSTT

SS





S
TTTT


SS
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   175....180.........190.........200.........210.........220.........230.........240.........250....
 
   216...220.........230.........240.........250..... ....260.........270.....
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Query Sequence  . . . . . . . . . . . . . . . . . VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN. . . GVVFALAYNGNLTALDLRSG
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Template Sequence  NREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNG
Template Known Secondary structure 
STT



TTTT
TTT

SSTT

S




S
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TTSTTT
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   255....260.........270.........280.........290.........300.........310.........320.........330....
 
   276...280......
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Query Sequence  QIMWKRELGSV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  KLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFV
Template Known Secondary structure 
SS


S
TTT


TTTT
SSS
SS
TT
SS
SS

TTTT




GGG

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   335....340.........350.........360.........370.........380.........390.........400.........410....
 
   287..290.........300.........310.........320.........330.........340.........350.........
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Query Sequence  . . . . . . . NDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVGDSEGYLHWINVEDGRFVAQ
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Template Sequence  TRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ
Template Known Secondary structure 

SS


SS
GGG




GGG
TTTTSSS



TTT
TTSTTT

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   415....420.........430.........440.........450.........460.........470.........480.........490....
 
   360.........370... ......380.....
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Query Sequence  QKVDSSGFQTEPVA. . ADGKLLIQAKDG
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Template Sequence  FEAQSG. IVAAPMTFELAGRQYVAIMAG
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SS
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TT
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   495....500 .........510.........520.
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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