Job Description P77774 Confidence 99.48% Date Thu Jan 5 12:32:43 GMT 2012 Rank 25 Aligned Residues 277 % Identity 9% Template c1gq1B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:cytochrome cd1 nitrite reductase; PDBTitle: cytochrome cd1 nitrite reductase, y25s mutant, oxidised2 form Resolution 1.40 Å

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		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	V	V	Y	A	A	D	R	A	G	L	V	K	A	L	N	A	D	D	G	K	E	I	W	S	V	S	L	A	E	K	D	G	W	F	S	K	E	P	A	L	L	S	G	G	V	T	V	S	G	G	H	V	Y	I	G	S	E	K	A	Q	V	Y	A	L	N	T	S	D	G	T	V	A	W	Q	T	K	V	A
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template Sequence		N	L	F	S	V	T	L	R	D	A	G	Q	I	A	L	I	D	G	A	T	Y	E	I	K	S	V	L	D	T	G	Y	A	V	H	I	S	R	.	.	.	.	.	.	.	.	.	L	S	A	S	G	R	Y	L	F	V	I	G	R	D	G	K	V	N	M	I	D	L	W	M	K	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		G							T	T	T	T							T	T	T										S	S							.	.	.	.	.	.	.	.	.			T	T	S								T	T	S							T	T	S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.										.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																																		.
Query SS confidence																																																																		.
Query Sequence		G	E	A	L	S	R	P	V	V	S	D	G	L	V	L	I	H	T	S	N	G	Q	L	Q	A	L	N	E	A	D	G	A	V	K	W	T	V	N	L	D	M	P	S	L	S	L	R	G	E	S	A	P	T	T	A	F	G	A	A	V	V	G	G	D	.	N	G	R	V	S	A	V	L	M	E	Q	G	Q	M	I
Query Conservation																																																																		.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	P	T	T	V	A	E	I	K	I	G	S	E	A	R	S	I	E	T	S	K	M	E	G	W	E	D	K	Y	A	I	A	G	A	Y	W	P	P	Q	Y	V	I	M	D	G	E	T	L	E	P	K
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S											S										S	T	T		T	T	T									T	T							T	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																															229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.						.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.																										.	.	.	.	.
Query SS confidence																																.	.	.																										.	.	.	.	.
Query Sequence		W	Q	Q	R	I	S	Q	A	T	G	S	T	E	I	D	R	L	S	D	V	D	T	T	P	V	V	V	N	G	V	.	.	.	V	F	A	L	A	Y	N	G	N	L	T	A	L	D	L	R	S	G	Q	I	M	W	K	R	E	.	.	.	.	.	L	G	S	V	N	D	F	I	V	D	G	N	R	I	Y	L	V
Query Conservation																																.	.	.																										.	.	.	.	.
Alig confidence																																.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		K	I	Q	S	T	R	G	M	T	Y	D	E	Q	E	Y	H	P	E	P	R	V	A	A	I	L	A	S	H	Y	R	P	E	F	I	V	N	V	K	E	T	G	K	I	L	L	V	D	Y	T	D	L	D	N	L	K	T	T	E	I	S	A	E	R	F	L	H	D	G	G	L	D	G	S	H	R	Y	F	I	T	A
Template Known Secondary structure											T	T	T					S											S	S	S	S							T	T	T	T							T	T		S	S	S										T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		300	.		.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.								.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure				.																					.	.	.	.	.																					.	.														.	.	.	.	.	.	.
Query SS confidence				.																					.	.	.	.	.																					.	.														.	.	.	.	.	.	.
Query Sequence		D	Q	.	N	D	R	V	M	A	L	T	I	D	G	G	V	T	L	W	T	Q	S	D	.	.	.	.	.	L	L	H	R	L	L	T	S	P	V	L	Y	N	G	N	L	V	V	G	D	.	.	S	E	G	Y	L	H	W	I	N	V	E	D	G	.	.	.	.	.	.	.	R	F	V	A	Q	Q	K	V	D	S
Query Conservation				.																					.	.	.	.	.																					.	.														.	.	.	.	.	.	.
Alig confidence				.																					.	.	.	.	.																					.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	N	A	R	N	K	L	V	V	I	D	T	K	E	G	K	L	V	A	I	E	D	T	G	G	Q	T	P	H	P	G	R	G	A	N	F	V	H	P	T	F	G	P	V	W	A	T	S	H	M	G	D	D	S	V	A	L	I	G	T	D	P	E	G	H	P	D	N	A	W	K	I	L	D	S	F	P	A	L	G
Template Known Secondary structure			G	G	G	T							T	T	T	T									S	S	S	S	B			T	T							T	T	T								B	S	S	S	S									T	T	T	S	T	T	T	B	T	S								S
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.									.	.	.	.	.	.	.	.	390	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.
Query Sequence		S	G	F	Q	T	E	P	V	A	A	D	G	K	L	L	I	Q	.	.	.	.	.	.	.	.	A	K	D	G	T	V	Y	S	I	T	R
Query Conservation																			.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	G	S	L	F	I	K	T	H	P	N	S	Q	Y	L	Y	V	D	A	T	L	N	P	E	A	E	I	S	G	S	V	A	V	F	D	I
Template Known Secondary structure		S									T	T		S							T	T		S	S					T							G
Template Predicted Secondary structure
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions