Job Description P77319 Confidence 99.86% Date Thu Jan 5 12:27:42 GMT 2012 Rank 27 Aligned Residues 306 % Identity 18% Template c3qb0C_ PDB info PDB header:structural protein Chain: C: PDB Molecule:actin-related protein 4; PDBTitle: crystal structure of actin-related protein arp4 from s. cerevisiae2 complexed with atp Resolution 3.40 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.				.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																								.	.	.
Query SS confidence																																								.	.	.
Query Sequence		I	G	I	D	L	G	T	T	N	S	L	I	A	V	W	K	D	G	A	A	Q	L	I	P	N	K	F	G	E	Y	L	T	P	S	I	I	S	M	.	.	.	D	E	N	N	H	I	L	V	G	K	P	A	V	S	R	R	T	S	H	P	D	K	T	A	A	L	F	K	R	A	M	G	S	N	T	N	W	R	L
Query Conservation																																								.	.	.
Alig confidence																									.	.	.	.	.	.	.	.								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	V	I	D	P	G	S	Y	T	T	N	I	G	Y	S	G	S	D	F	P	Q	S	I	.	.	.	.	.	.	.	.	L	P	S	V	Y	G	K	Y	T	A	D	E	G	N	K	K	I	F	S	E	Q	S	I	G	I	P	R	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	E	L	K	P	I	I
Template Known Secondary structure								S	S							T	T		S	S		S			.	.	.	.	.	.	.	.			S						S	S		S	S							T	T	G	G	G	S			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.						S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.									40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.														.	70	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.		.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																																																							.
Query SS confidence																																																							.
Query Sequence		G	S	D	T	F	N	A	P	E	L	S	S	L	V	L	R	S	L	K	E	D	A	E	E	F	L	Q	R	P	I	K	D	V	V	I	S	V	P	A	Y	F	S	D	E	Q	R	K	H	T	R	L	A	A	.	E	L	A	G	L	N	A	V	R	L	I	N	E	P	T	A	A	A	M	A	Y	G	L	H	T	Q
Query Conservation																																																							.
Alig confidence																																																							.																								.	.	.
Template Conservation																																																																															.	.	.
Template Sequence		E	N	G	L	V	I	D	W	D	T	A	Q	E	Q	W	Q	W	A	L	Q	N	E	L	Y	L	N	S	N	S	G	I	P	A	L	L	T	E	P	V	W	N	S	T	E	N	R	K	K	S	L	E	V	L	L	E	G	M	Q	F	E	A	C	Y	L	A	P	T	S	T	C	V	S	F	A	A	G	R	.	.	.
Template Known Secondary structure			T	T			S																T	S			S			T	T									T	T															T	T	S			S																T		.	.	.
Template Predicted Secondary structure																																																																															.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.																			.	220	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	N	T	R	S	L	V	F	D	L	G	G	G	T	F	D	V	T	V	L	E	Y	A	T	P	V	I	E	V	H	A	S	A	G	D	N	F	L	G	G	E	D	F	T	H	M	L	V	D	E	V	L	K	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	A	R	T	T	L
Query Conservation																																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																																.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																.	.	.
Template Sequence		.	.	P	N	C	L	V	V	D	I	G	H	D	T	C	S	V	S	P	I	V	D	G	M	T	L	S	K	S	T	R	R	N	.	.	.	F	I	A	G	K	F	I	N	H	L	I	K	K	A	L	E	P	K	E	I	I	P	L	F	A	I	K	Q	R	K	P	E	F	I	K	K	T	F	D	Y	E	V	D	K
Template Known Secondary structure		.	.	S	S								S	S									T	T				G	G	G					.	.	.	S		S												T	T	T	S					S	T	T					S	S	S							S	S
Template Predicted Secondary structure		.	.																																.	.	.
Template SS confidence
				153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.				.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.																.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	E	S	E	L	A	A	L	Y	A	C	V	E	A	A	K	C	S	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	L	H	I	R	W	Q	Y	Q	E	E	T	R	E	C	E	F	Y	E	N	E	L	E	D	L	W	L	P	L	L	N	R	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	L	Y	D	Y	A	N	N	R	G	F	F	Q	E	C	K	E	T	L	C	H	I	C	P	T	K	T	L	E	E	T	K	T	E	L	S	S	T	A	K	R	S	I	E	S	P	W	N	E	E	I	V	F	D	N	E	T	R	Y	G	F	A	E	E	L	F	L	P	K	E	D	D	I	P	A	N	W	P	R	S
Template Known Secondary structure											T									T					S	S												T									S	S	S																T	T	T	S			T	T	T	S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
																											279	280	.	.	.	.	.	.	.	.	.	290	.	.	.			.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																													.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																													.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	V	P	I	E	Q	A	L	R	D	A	R	L	K	.	.	P	S	Q	I	D	S	L	V	L	V	G	G	A	S	Q	M	P	L	V	Q	R	I	A	V	R	L	F	G	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																													.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.																													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	S	G	V	V	K	T	W	R	N	D	Y	V	P	L	K	R	T	K	N	N	E	L	I	G	L	A	D	L	V	Y	S	S	I	M	S	S	D	V	D	L	R	A	T	L	A	H	N	V	V	L	T	G	G	T	S	S	I	P	G	L	S	D	R	L	M	T	E	L	N	K	I	L	P	S	L	K	F	R	I
Template Known Secondary structure		S	S							S																											T	S		T	T	T						T	T					S	G	G	G	G	S	T	T													S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	P	Y	Q	S	Y	D	P	S	T	I	V	A	L	G	A	A	I	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	T	G	H	T	I	E	R	Q	Y	Q	S	W	L	G	G	S	I	L	T
Template Known Secondary structure					S		G	G	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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