Phyre 2 alignment of P77319 with c3mdqA

Job Description P77319
Confidence 96.88% Date Thu Jan 5 12:27:42 GMT 2012

Rank 87 Aligned Residues 258

% Identity 14% Template c3mdqA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:exopolyphosphatase; PDBTitle: crystal structure of an exopolyphosphatase (chu_0316) from cytophaga2 hutchinsonii atcc 33406 at 1.50 a resolution

Resolution 1.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.			.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence	A	I	G	I	D	L	G	T	T	N	S	L	I	A	V	.	.	W	K	D	G	A	A	Q	L	I	P	N	K	F	G	E	Y	L	T	P	S	I	I	S	M	D	E	N	N	H	I	L	V	G	K	P	A	V	S	R	R	T	S	H	P	D	K	T	A	A	L	F	K	R	A	M	G	S	N	T	N	W	R	L
Query Conservation																.	.
Alig confidence																.	.										.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	G	V	I	D	X	G	T	N	T	F	H	L	L	I	T	D	I	V	N	D	R	P	H	T	L	.	.	.	.	V	N	E	K	S	A	V	G	L	G	K	G	G	I	T	K	G	F	I	T	E	E	A	X	D	R	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure								S	S											T	T						.	.	.	.									S	S	T	T	T	G	G	G	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30					.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.

	85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	G	S	D	T	F	N	A	P	E	L	S	S	L	V	L	R	S	L	K	E	D	A	E	E	F	L	Q	R	P	I	K	D	V	V	I	S	V	P	A	Y	F	S	D	E	Q	R	K	H	T	R	L	A	A	E	L	A	G	L	N	A	V	R	L	I	N	E	P	T	A	A	A	M	A	Y	G	L	H	T	Q	Q
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	D	T	L	K	K	F	R	V	I	L	D	E	H	.	A	V	V	H	V	I	A	T	G	T	S	A	V	R	S	G	S	N	K	Q	V	L	I	D	R	I	K	K	E	V	N	I	D	V	E	V	I	D	G	A	R	E	A	E	L	I	F	R	G	V	Q	Q	A	V
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.													T	.	T																T	T																																				S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.														.
Template SS confidence
													59	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.

				165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure	.	.	.
Query SS confidence	.	.	.
Query Sequence	.	.	.	N	T	R	S	L	V	F	D	L	G	G	G	T	F	D	V	T	V	L	E	Y	A	T	P	V	I	E	V	H	A	S	A	G	D	N	F	L	G	G	E	D	F	T	H	M	L	V	D	E	V	L	K	R	A	D	V	A	R	T	T	L	N	E	S	E	L	A	A	L	Y	A	C	V	E	A	A	K
Query Conservation	.	.	.
Alig confidence	.	.	.																								.	.	.	.	.																				.	.	.	.	.
Template Conservation																											.	.	.	.	.																				.	.	.	.	.
Template Sequence	P	X	E	D	H	I	S	L	A	X	D	I	G	G	G	S	V	E	F	I	I	G	N	K	N	E	.	.	.	.	.	I	L	W	K	Q	S	F	E	I	G	G	Q	R	L	I	D	R	F	H	.	.	.	.	.	V	H	D	P	X	R	E	D	D	R	V	X	X	H	N	Y	F	D	E	V	L	V	P	L	E
Template Known Secondary structure			T	T										S	S									S	S		.	.	.	.	.								S										S		.	.	.	.	.			S	S																	T
Template Predicted Secondary structure																											.	.	.	.	.																				.	.	.	.	.
Template SS confidence
	126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.						.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170						.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.

	242	.	.	.	.	.	.	.	250	.	.	.	.	.	.																						.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.																						.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	C	S	N	Q	S	P	L	H	I	R	W	Q	Y	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	T	R	E	C	E	F	Y	E	N	E	L	E	D	L	W	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	L	L	N	R	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	K	A	I	N	T	W	R	P	T	Q	L	I	G	C	S	G	T	F	D	T	L	A	E	X	N	I	Q	H	H	R	E	K	I	A	L	E	K	Q	T	S	Y	L	L	S	L	P	D	F	N	R	L	R	K	Q	L	V	A	S	T	R	R	E	R	L	A	I	A	G	X	I	E	L	R	A	D	X	V	V	V	A
Template Known Secondary structure															S															T					G	G	G		S																										T	S	T	T
Template Predicted Secondary structure
Template SS confidence
	196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	V	P	I	E	Q	A	L	R	D	A	R	L	K	P	S	Q	I	D	S	L	V	L	V	G	G	A	S	Q	M	P	L	V	Q	R	I	A	V	R
Query Conservation
Alig confidence													.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence	I	C	L	I	E	H	V	L	K	L	V	S	.	.	.	.	.	T	N	A	I	T	V	S	T	Y	S	L	K	E	G	V	L	Y	T	X	L	D	G
Template Known Secondary structure											S		.	.	.	.	.		S						S														T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
	276	.	.	.	280	.	.	.	.	.	.	.						.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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