Job Description P77319 Confidence 97.60% Date Thu Jan 5 12:27:42 GMT 2012 Rank 69 Aligned Residues 303 % Identity 12% Template c2ch5D_ PDB info PDB header:transferase Chain: D: PDB Molecule:nagk protein; PDBTitle: crystal structure of human n-acetylglucosamine kinase in2 complex with n-acetylglucosamine Resolution 1.9 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	L	A	I	G	I	D	L	G	T	T	N	S	L	I	A	V	W	K	D	G	A	A	Q	L	I	P	N	K	F	G	E	Y	L	T	P	S	I	I	S	M	D	E	N	N	H	I	L	V	G	K	P	A	V	S	R	R	T	S	H	P	D	K	T	A	A	L	F	K	R	A	M	G	S	N	T	N	W	R
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	A	I	Y	G	G	V	E	G	G	G	T	R	S	E	V	L	L	V	S	E	D	G	.	.	.	.	.	.	.	.	.	.	.	K	I	L	A	E	A	D	G	L	S	T	N	H	W	L	I	G	T	D	K	C	V	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S										T	T									T	T	S	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.												.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.				.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure																																																														.	.	.
Query SS confidence																																																														.	.	.
Query Sequence		L	G	S	D	T	F	N	A	P	E	L	S	S	L	V	L	R	S	L	K	E	D	A	E	E	F	L	Q	R	P	I	K	D	V	V	I	S	V	P	A	Y	F	S	D	E	Q	R	K	H	T	R	L	A	A	E	L	A	G	L	N	.	.	.	A	V	R	L	I	N	E	P	T	A	A	A	M	A	Y	G	L
Query Conservation																																																														.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																			.	.	.															.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.																																																																				.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	R	I	N	E	M	V	N	R	A	K	R	K	A	G	V	D	P	L	V	P	L	R	S	L	G	L	S	L	S	G	G	D	Q	E	D	A	G	R	I	L	I	E	E	L	R	D	R	F	P	Y	L	S	E	S	Y	L	I	T	T	D	A	A	G	S	I	A	T	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.														T			T	T			B	S							T	T	T	T																	T	T	S	B	S															.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.																																																																				.	.	.
Template SS confidence
												48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.					.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.
Query SS confidence																																						.	.	.	.
Query Sequence		H	T	Q	Q	N	T	R	S	L	V	F	D	L	G	G	G	T	F	D	V	T	V	L	E	Y	A	T	P	V	I	E	V	H	A	S	A	.	.	.	.	G	D	N	F	L	G	G	E	D	F	T	H	M	L	V	D	E	V	L	K	R	A	D	V	A	R	T	T	L	N	E	S	E	L	A	A	L	Y	A	C
Query Conservation																																						.	.	.	.
Alig confidence		.	.																.	.																		.	.	.	.
Template Conservation		.	.																.	.
Template Sequence		.	.	A	T	P	D	G	G	V	V	L	I	S	G	T	G	S	.	.	N	C	R	L	I	N	P	D	G	S	E	S	G	C	G	G	W	G	H	M	M	G	D	E	G	S	A	Y	W	I	A	H	Q	A	V	K	I	V	F	D	S	I	D	N	L	E	A	A	P	H	D	I	G	Y	V	K	Q	A	M	F	H
Template Known Secondary structure		.	.			S	S								S	S	S		.	.							T	T	S										T	T	T			T	T	S																		T	S	S			S	S
Template Predicted Secondary structure		.	.																.	.
Template SS confidence
				115	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.															.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Query Sequence		V	E	A	A	K	C	S	N	Q	S	P	L	H	I	R	W	Q	Y	Q	E	E	T	R	E	C	E	F	Y	E	N	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	L	W	L	P	L	L	N	R	L	R	V	P	I	E	Q	A	L	R	D	A	R	L	K	P	S	Q	I	D	S	.	.	.
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.									.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.																																									.
Template Sequence		Y	F	Q	V	P	D	R	L	G	I	L	T	H	L	Y	R	D	F	D	.	.	.	.	.	.	.	.	.	K	C	R	F	A	G	F	C	R	K	I	A	E	G	A	Q	Q	G	D	P	L	S	R	Y	I	F	R	K	A	G	E	M	L	G	R	H	I	V	A	V	.	L	P	E	I	D	P	V	L	F	Q	G
Template Known Secondary structure				T		S	S									T	T	T			.	.	.	.	.	.	.	.	.						T	T										T	T																							.	G	G	G	S		G	G	G	G		S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.																																									.
Template SS confidence
		191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.										210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.		250	.	.	.	.	.	.	.	.	.	260
							300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.						.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.											.													.	.	.	.	.
Query SS confidence		.	.	.	.	.											.													.	.	.	.	.
Query Sequence		.	.	.	.	.	L	V	L	V	G	G	A	S	Q	M	.	P	L	V	Q	R	I	A	V	R	L	F	G	.	.	.	.	.	K	L	P	Y	Q	S	Y	D	P	S	T	I	V	A	L	G	A	A	I	Q	A	A	C	R	L	R	S	E	D	I	E	E	V	I	L	T	D	I	C	P	Y	S	L	G	V	E
Query Conservation		.	.	.	.	.											.													.	.	.	.	.
Alig confidence		.	.	.	.	.											.													.	.	.	.	.
Template Conservation
Template Sequence		K	I	G	L	P	I	L	C	V	G	S	V	W	K	S	W	E	L	L	K	E	G	F	L	L	A	L	T	Q	G	R	E	I	F	S	S	F	T	L	M	K	L	R	H	S	S	A	L	G	G	A	S	L	G	A	R	H	I	G	H	L	L	P	M	D	Y	S	A	N	A	I	A	F	Y	S	Y	T	F	S
Template Known Secondary structure		S	S								S	G	G	G	G	G																												S	S		T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions