Job Description P77319 Confidence 96.09% Date Thu Jan 5 12:27:42 GMT 2012 Rank 91 Aligned Residues 261 % Identity 10% Template c1z6rC_ PDB info PDB header:transcription Chain: C: PDB Molecule:mlc protein; PDBTitle: crystal structure of mlc from escherichia coli Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	A	E	L	A	I	G	I	D	L	G	T	T	N	S	L	I	A	V	W	K	D	G	A	A	Q	L	I	P	N	K	F	G	E	Y	L	T	P	S	I	I	S	M	D	E	N	N	H	I	L	V	G	K	P	A	V	S	R	R	T	S	H	P	D	K	T	A	A	L	F	K	R	A	M	G	S	N	T	N
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	E	A	W	H	Y	L	S	L	R	I	S	R	G	E	I	F	L	A	L	R	D	L	S	S	K	L	V	V	E	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure			T	T										T	T									T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																																																	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.														.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		W	R	L	G	S	D	T	F	N	A	P	E	L	S	S	L	V	L	R	S	L	K	E	D	A	E	E	F	.	.	L	Q	R	P	I	K	D	V	V	I	S	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	A	Y	F	S	D	E	Q	R	K	H	T	R	L	A	A	E	L	A	G	L	N	A	V	R
Query Conservation																														.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.																					.	.														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.
Template Sequence		Q	E	L	A	L	K	.	.	D	D	L	P	L	L	D	R	I	I	S	H	I	D	Q	F	F	I	R	H	Q	K	K	L	E	R	L	T	S	I	A	I	T	L	P	G	I	I	D	T	E	N	G	I	V	H	R	X	P	F	Y	E	D	V	K	E	X	P	L	G	E	A	L	E	Q	H	T	G	V	P	V	Y
Template Known Secondary structure						S	S	.	.		S	S																	T	T	T	T												S	S				T	T	T	T						S	S		T	T		S	S	B												S
Template Predicted Secondary structure								.	.
Template SS confidence
		114	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		147	.	.	150	.	.	.	.	.	.	.	.	.	160			.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	I	N	E	P	T	A	A	A	M	A	Y	G	L	.	.	H	T	Q	Q	N	T	R	S	L	V	F	D	L	G	G	G	T	F	D	V	T	V	L	E	Y	A	T	P	V	I	E	V	H	A	S	A	G	D	N	F	L	G	G	E	D	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																.	.																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.																	.										.	.	.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.										.	.	.	.	.	.
Template Sequence		I	Q	H	D	I	S	A	W	T	X	A	E	A	L	F	G	A	S	R	G	A	R	D	V	I	Q	V	V	I	D	H	N	.	V	G	A	G	V	I	T	D	G	.	.	.	.	.	.	H	L	L	H	A	G	S	S	S	L	V	E	I	G	H	T	Q	V	D	P	Y	G	K	R	C	Y	C	G	N	H	G	C
Template Known Secondary structure																T	S	T	T	T	T		S	S							S	S	S	.								T	T	.	.	.	.	.	.			T	T	T	T	S	S			B		G	G	G	S	B	S		T	T	S		B		T	T	S	S	B	S	B
Template Predicted Secondary structure																																		.										.	.	.	.	.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.							.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
								207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Predicted Secondary structure		.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	T	H	M	L	V	D	E	V	L	K	R	A	D	V	A	R	T	T	L	N	E	S	E	L	A	A	L	Y	A	C	V	E	A	A	K	C	S	N	Q	S	P	L	H	I	R	W	Q	Y	Q	E	E	T	R	E	C	E	F	Y	E	N	E	L	E	D	L	W	L	P	L	L	N	R	L	R
Query Conservation		.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	E	T	I	A	S	V	D	S	I	L	E	L	A	Q	L	R	L	N	Q	S	X	S	S	X	L	H	G	Q	P	L	T	V	D	S	L	C	Q	A	A	L	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	L	L	A	K	D	I	I	T	G	V	G	A	H	V	G
Template Known Secondary structure		T					S														T		S	S		G	G	G	G	S														T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.																						.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.						310	.	.	.	.	.	.	.	.	.	320							.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.												.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.												.	.	.	.	.	.
Query Sequence		V	P	I	E	Q	A	L	R	D	A	R	L	K	P	S	Q	I	D	S	L	V	L	V	G	G	A	S	Q	M	.	.	.	.	.	P	L	V	Q	R	I	A	V	R	L	F	.	.	.	.	.	.	G	K	L	P	Y	Q	S	Y	D	P	S	T	I	V	A	L	G	A	A	I	Q	A	A	C	R
Query Conservation																															.	.	.	.	.												.	.	.	.	.	.
Alig confidence													.	.	.	.	.														.	.	.	.	.												.	.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		R	I	L	A	I	X	V	N	L	F	N	.	.	.	.	.	P	Q	K	I	L	I	G	S	P	L	S	K	A	A	D	I	L	F	P	V	I	S	D	S	I	R	Q	Q	A	L	P	A	Y	S	Q	H	I	S	V	E	S	T	Q	F	S	N	Q	G	T	X	A	G	A	A	L	V	K	D	A	X
Template Known Secondary structure													.	.	.	.	.		S						S	G	G	G	G	G																S						S	S							S	S				T	T	T	T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		324	.	.	.	.	.	330	.	.	.	.						.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions