Job Description P77319 Confidence 99.95% Date Thu Jan 5 12:27:42 GMT 2012 Rank 23 Aligned Residues 298 % Identity 15% Template c1mwmA_ PDB info PDB header:structural protein Chain: A: PDB Molecule:parm; PDBTitle: parm from plasmid r1 adp form Resolution 2.00 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	I	G	I	D	L	G	T	T	N	S	L	I	A	V	W	K	D	G	A	A	Q	L	I	P	N	K	F	G	E	Y	L	T	P	S	I	I	S	M	D	E	N	N	H	I	L	V	G	K	P	A	V	S	R	R	T	S	H	P	D	K	T	A	A	L	F	K	R	A	M	G	S	N	T	N	W	R	L	G
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template Sequence		M	L	V	F	I	D	D	G	S	T	N	I	K	L	Q	W	Q	E	S	D	G	T	I	K	Q	.	.	.	.	.	.	.	.	H	I	S	P	N	S	F	K	R	E	W	A	V	S	F	G	D	K	K	V	F	N	Y	T	.	.	.	.	.	.	L	N	G	E	Q	Y	S	F	D	P	I	S	P	D	T	N	I
Template Known Secondary structure										S	S									T	T	S					.	.	.	.	.	.	.	.									S	S					S	S	S	S							.	.	.	.	.	.	S	S	S														T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.																									.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.									.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.							50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.															.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	D	T	F	N	A	P	E	L	S	S	L	V	L	R	S	L	K	E	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	E	E	F	L	Q	R	P	I	K	D	V	V	I	S	V	P	A	Y	F	S	D	E	Q	R	K	H	T	R	L	A	A	E	L	A	G	L	N	A	V	R	L	I	N	E	P
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.
Template Sequence		A	W	Q	Y	S	D	V	N	V	V	.	A	V	H	H	A	L	L	T	S	G	L	P	V	S	E	V	D	I	V	C	T	L	P	L	T	E	Y	Y	D	R	N	N	Q	P	N	T	E	N	I	E	R	K	K	A	N	F	R	K	K	I	T	L	N	G	G	D	T	F	T	I	K	D	V	K	V	M	P	E	S
Template Known Secondary structure		G	G	G	G	S						.								T	S	S			S															B		T	T	S		B												T	T	S					T	T	B													S
Template Predicted Secondary structure												.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	A	A	M	A	Y	G	L	H	T	Q	Q	N	T	R	S	L	V	F	D	L	G	G	G	T	F	D	V	T	V	L	E	Y	A	T	P	V	I	E	V	H	A	S	A	G	D	N	F	L	G	G	E	D	F	T	H	M	L	V	D	E	V	L	K	R	A	D	V	A	R	T	T	L	N	E	S	E	L	A
Query Conservation
Alig confidence																																			.	.
Template Conservation																																			.	.
Template Sequence		I	P	A	G	Y	E	V	L	Q	E	L	D	E	L	D	S	L	L	I	I	D	L	G	G	T	T	L	D	I	S	Q	V	M	.	.	G	K	L	S	G	I	S	K	I	Y	G	D	S	S	L	G	V	S	L	V	T	S	A	V	K	D	A	L	S	L	A	R	T	K	G	S	S	Y	L	A	D	D	I	I	I
Template Known Secondary structure										T	T	S		T	T										S	S									.	.	G	G	G										T	T														T	T			T	T	G	G	G
Template Predicted Secondary structure																																			.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	Y	A	C	V	E	A	A	K	C	S	N	Q	S	P	L	H	I	R	W	Q	Y	Q	E	E	T	R	E	C	E	F	Y	E	N	E	L	E	D	L	W	L	P	L	L	N	R	L	R	V	P	I	E	Q	A	L	R	D	A	R	L	K	P	S	Q	I	D	S	L	V	L	V	G	G	A	S	Q	M	P	L
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Template Sequence		H	R	K	D	N	N	Y	L	K	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	N	D	E	N	K	I	S	I	V	T	E	A	M	N	E	A	L	R	K	L	E	Q	R	V	L	N	T	L	N	E	F	S	G	Y	T	H	V	M	V	I	G	G	G	A	E	L	.	.
Template Known Secondary structure		T	T	T									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S		S																										T	T			S								S	T	T				.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.																					.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure														.	.	.
Query SS confidence														.	.	.
Query Sequence		V	Q	R	I	A	V	R	L	F	G	K	L	.	.	.	P	Y	Q	S	Y	D	P	S	T	I	V	A	L	G	A	A	I	Q	A
Query Conservation														.	.	.
Alig confidence														.	.	.
Template Conservation
Template Sequence		I	C	D	A	V	K	K	H	T	Q	I	R	D	E	R	F	F	K	T	N	N	S	Q	Y	D	L	V	N	G	M	Y	L	I	G
Template Known Secondary structure											T			G	G	G					S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions