Job Description P0AAW1 Confidence 100.00% Date Thu Jan 5 11:13:59 GMT 2012 Rank 2 Aligned Residues 248 % Identity 16% Template c3ngoA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:ccr4-not transcription complex subunit 6-like; PDBTitle: crystal structure of the human cnot6l nuclease domain in complex with2 poly(a) dna Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.													.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	D	Q	T	Q	Q	F	S	F	K	V	L	T	I	N	I	H	K	G	F	T	A	F	.	.	.	.	.	.	.	.	.	.	.	.	N	R	R	F	I	L	P	E	L	R	D	A	V	R	T	V	S	A	D	I	V	C	L	Q	E	V	M	G	A	H	E	V	H	P	L	H	V	E	N	W	P	D	T	S	H
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	D	I	L	P	S	A	S	F	T	V	M	C	Y	N	V	L	C	D	K	Y	A	T	R	Q	L	Y	G	Y	C	P	S	W	A	L	N	W	E	Y	R	K	K	G	I	M	E	E	I	V	N	C	D	A	D	I	I	S	L	Q	E	V	E	T	E	Q	Y	F	T	L	F	L	P	A	L	K	E	R	G	Y	D
Template Known Secondary structure																				G	G	G			T	T	T	T	T	T	S						S																		S															T							T	T	T
Template Predicted Secondary structure
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.				100	.	.	.	.	.	.	.	.	.	110	.	.	.																		.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	E	F	L	A	D	T	M	W	S	D	F	A	Y	G	R	N	A	V	Y	P	E	G	H	H	G	N	A	V	L	.	.	.	S	R	Y	P	I	E	H	Y	E	N	R	D	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	G	A	E	K	R	G	V	L	Y	C	R	I	V	P
Query Conservation																																.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.														.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.
Template Sequence		G	F	F	S	P	K	S	R	A	K	I	M	S	.	.	.	.	E	Q	E	R	K	H	V	D	G	C	A	I	F	F	K	T	E	K	F	T	L	V	Q	K	H	T	V	E	F	N	Q	V	A	M	A	N	S	D	G	S	E	A	M	L	N	R	V	M	T	K	D	N	I	G	V	A	V	V	L	E	V	H	K
Template Known Secondary structure							S		T	T	S				.	.	.	.																T	T	T																		T		S	S								T	T	T														G
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		261	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.				150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.			.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																						.	.	.																		.	.																																				.	.	.
Query SS confidence																						.	.	.																		.	.																																				.	.	.
Query Sequence		P	M	T	G	K	A	I	H	V	M	C	V	H	L	G	L	R	E	A	H	.	.	.	R	Q	A	Q	L	A	M	L	A	E	W	V	N	E	L	P	D	.	.	G	E	P	V	L	V	A	G	D	F	N	D	W	R	Q	K	A	N	H	P	L	K	V	Q	A	G	L	D	E	I	F	T	R	A	H	.	.	.
Query Conservation																						.	.	.																		.	.																																				.	.	.
Alig confidence																						.	.	.																		.	.																																				.	.	.
Template Conservation
Template Sequence		E	L	F	K	Q	L	L	I	V	A	N	A	H	M	H	W	D	P	E	Y	S	D	V	K	L	I	Q	T	M	M	F	V	S	E	V	K	N	I	L	E	K	A	S	I	P	L	V	L	C	A	D	L	N	S	L	P	D	S	G	V	V	E	Y	L	S	N	G	G	V	A	D	N	H	K	D	F	K	E	L	Y
Template Known Secondary structure		G	G																G	G	G																																				T	T	S								S	S				T	T		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
																								202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.															.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	P	A	R	T	F	P	V	Q	F	P	L	L	R	L	D	R	I	Y	V	K	N	A	S	A	S	A	P	T	A	L	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	T	W	R	H	L	S	D	H	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	E	C	L	M	N	F	S	R	I	T	H	G	F	Q	L	K	S	A	Y	E	N	N	L	M	P	Y	T	N	Y	T	F	D	F	K	G	V	I	D	Y	I	F	Y	S	K	T	H	M	N	V	L	G	V	L	G	P	L	D	P	Q	W	L	V	E	N	N	I	T	G	C	P	H	P	H	I	P	S	D	H	F
Template Known Secondary structure						T	T							S						T	T	T	T	T	S	S	S		S				S	S												T	T	T																		T	T			S	S		B	T	T	B		S	S	B
Template Predicted Secondary structure
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520
		246	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	S	A	E	I	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	L	T	Q	L	E	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		531	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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