Job Description P0AAW1 Confidence 99.95% Date Thu Jan 5 11:13:59 GMT 2012 Rank 14 Aligned Residues 222 % Identity 19% Template c2voaB_ PDB info PDB header:lyase Chain: B: PDB Molecule:exodeoxyribonuclease iii; PDBTitle: structure of an ap endonuclease from archaeoglobus fulgidus Resolution 1.7 Å

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		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	K	V	L	T	I	N	I	H	K	G	F	T	A	F	N	R	R	F	I	L	P	E	L	R	D	A	V	R	T	V	S	A	D	I	V	C	L	Q	E	V	M	G	A	H	E	V	H	P	L	H	V	E	N	W	P	D	T	S	H	Y	E	F	L	A	D	T	M	W	S	D	F	A	Y	G	R	N	A	V	Y
Query Conservation
Alig confidence													.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	K	I	A	T	F	N	V	N	S	I	.	.	.	.	.	.	R	S	R	L	H	I	V	I	P	W	L	K	E	N	K	P	D	I	L	C	M	Q	E	T	K	V	E	N	R	K	F	P	E	A	D	F	H	R	I	G	Y	H	V	V	F	S	G	S	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure										S		G	.	.	.	.	.	.	G	G	T														S											G	G	G								T	T	T									T	T	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.							.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.
		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		P	E	G	H	H	G	N	A	V	L	S	R	Y	P	I	E	H	Y	E	N	R	D	V	S	V	D	G	A	E	K	R	G	V	L	Y	C	R	I	V	P	P	M	T	G	K	A	I	H	V	M	C	V	H	L	G	L	R	E	A	H	R	Q	A	Q	L	A	M	L	A	E	W	V	N	E	L	P	D	G	.	E
Query Conservation																																																																																.
Alig confidence		.	.	.																																																																												.
Template Conservation		.	.	.
Template Sequence		.	.	.	R	N	G	V	A	I	A	S	L	E	E	P	E	D	V	S	F	G	L	D	S	E	P	K	D	E	D	R	L	I	R	A	K	I	A	G	I	D	V	I	N	T	Y	V	P	Q	G	F	K	I	D	S	E	K	Y	Q	Y	K	L	Q	W	L	E	R	L	Y	H	Y	L	Q	K	T	V	D	F	R	S
Template Known Secondary structure		.	.	.									S	S								S		S	S	S	S			G	G	G							T	T												S		T	T	S																							T	T	S
Template Predicted Secondary structure		.	.	.
Template SS confidence
					63	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.																				.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.										.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Query Sequence		P	V	L	V	A	G	D	F	N	D	W	R	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	H	P	L	K	V	Q	A	G	L	D	E	I	F	T	R	A	H	G	R	P	A	R	.	.	.	.	.	.	.	.	.	T	F	P	V	Q	F	P	L	L	R	L	D	R	I
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	A	V	W	C	G	D	M	N	V	A	P	E	P	I	D	V	H	S	P	D	K	L	K	N	H	V	F	H	E	D	A	R	R	A	Y	K	K	I	L	E	L	G	F	V	D	V	L	R	K	I	H	P	N	E	R	I	Y	T	F	Y	D	Y	R	V	K	G	A	I	E	R	G	L	G	W	R	G	D	A	I
Template Known Secondary structure										S				S	G	G	G	B	S		T	T	T	T	T	T																T	T	T										T	T					S	B			T	T	S	T	T	T	T	T	T	T			B
Template Predicted Secondary structure
Template SS confidence
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.					.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		Y	V	K	N	A	S	A	S	A	P	T	A	L	P	L	R	.	.	.	.	T	W	R	H	L	S	D	H	A	P	L	S	A	E	I	H	L
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.
Template Conservation
Template Sequence		L	A	T	P	P	L	A	E	R	C	V	D	C	Y	A	D	I	K	P	R	L	A	E	K	P	S	D	H	L	P	L	V	A	V	F	D	V
Template Known Secondary structure									T	T													S	S	S			S	B
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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