Job Description P0AAW1 Confidence 99.97% Date Thu Jan 5 11:13:59 GMT 2012 Rank 5 Aligned Residues 235 % Identity 20% Template c2j63B_ PDB info PDB header:lyase Chain: B: PDB Molecule:ap-endonuclease; PDBTitle: crystal structure of ap endonuclease lmap from leishmania2 major Resolution 2.48 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	F	S	F	K	V	L	T	I	N	I	H	K	G	F	T	A	F	N	R	R	F	I	L	P	E	L	R	D	A	V	R	T	V	S	A	D	I	V	C	L	Q	E	V	M	G	A	H	E	V	H	P	L	H	V	E	N	W	P	D	T	S	H	Y	E	F	L	A	D	T	M	W	S	D	F	A	Y	G	R
Query Conservation
Alig confidence																	.	.																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																	.	.																																										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	S	R	M	Y	K	F	I	T	W	N	V	A	G	L	.	.	R	G	L	L	K	K	N	A	S	A	L	R	A	F	M	E	A	E	K	P	D	V	L	C	L	Q	E	T	K	L	N	V	D	E	A	D	A	N	A	T	L	.	.	.	.	.	.	.	.	.	.	.	G	V	V	D	G	Y	S	F	V	D	H
Template Known Secondary structure		T	T	T										S			.	.								T	T												S										B	T	T							T	S	.	.	.	.	.	.	.	.	.	.	.	S			T	T
Template Predicted Secondary structure																	.	.																																										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.												.	.	.	.	.	.	.	.	190	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.													.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Query Sequence		N	A	V	Y	P	E	G	H	H	G	N	A	V	L	S	R	Y	P	I	E	H	Y	E	N	R	D	V	S	V	D	G	A	E	K	R	G	.	.	.	.	.	.	.	.	.	.	.	.	V	L	Y	C	R	I	V	P	P	M	T	G	K	A	I	H	V	M	C	V	H	L	G	L	R	E	.	.	.	.	.	.
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Conservation
Template Sequence		P	C	A	F	K	R	G	Y	S	G	T	R	T	Y	M	K	N	S	T	T	V	K	G	L	H	A	R	C	T	R	G	F	A	L	P	S	E	L	V	E	G	A	G	D	E	E	G	R	V	L	T	T	F	L	S	P	D	P	D	S	S	R	I	A	L	V	N	T	Y	V	A	N	S	G	M	G	L	T	R	L
Template Known Secondary structure			B	S	S	S	T	T	S															T	T							S	S													T	T										S	S																		T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
										148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.																									.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																		.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																		.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	A	H	R	Q	A	Q	L	A	M	L	A	E	W	V	N	E	L	.	.	P	D	G	E	P	V	L	V	A	G	D	F	N	D	W	R	Q	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	N	H	P	L	K	V	Q	A	G	L
Query Conservation		.	.	.	.	.	.	.	.																		.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																		.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	Y	R	V	Q	S	F	D	P	S	M	R	E	Y	L	H	R	L	D	T	W	A	T	E	N	A	A	S	S	P	H	G	F	I	W	A	G	D	L	N	V	A	E	R	D	Y	D	R	Y	Y	A	G	T	F	K	S	M	Q	E	C	S	G	F	A	P	E	E	R	M	S	F	R	E	T	M	Q	R	T	N	S
Template Known Secondary structure							T																	T	T	T	T				S														S	T	T	S	B				S						T	T	S	T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210	.	.	.	.	.	.								.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure												.	.														.	.	.	.	.	.	.
Query SS confidence												.	.														.	.	.	.	.	.	.
Query Sequence		D	E	I	F	T	R	A	H	G	R	.	.	P	A	R	T	F	P	V	Q	F	P	L	L	R	.	.	.	.	.	.	.	L	D	R	I	Y	V	K	N	A	S	A	S	A	P	T	A	L	P	L	R	T	W	R	H	L	S	D	H	A	P	L	S	A	E	I	H	L
Query Conservation												.	.														.	.	.	.	.	.	.
Alig confidence												.	.														.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	I	F	R	Q	L	Y	P	Q	A	G	P	V	Y	S	F	W	S	Q	R	I	N	G	R	P	R	N	L	G	W	R	L	D	Y	F	V	V	S	S	R	L	A	S	Y	V	V	D	C	F	P	M	P	T	V	M	G	S	D	H	C	P	F	Q	M	W	M	R	H
Template Known Secondary structure									S	T	T	B		S			S	B			T	T	T	T	T	T	T	T	T			B													T	T								T	T			S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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