Job Description P0AAW1 Confidence 99.91% Date Thu Jan 5 11:13:59 GMT 2012 Rank 23 Aligned Residues 195 % Identity 15% Template c2ei9A_ PDB info PDB header:gene regulation Chain: A: PDB Molecule:non-ltr retrotransposon r1bmks orf2 protein; PDBTitle: crystal structure of r1bm endonuclease domain Resolution 2.00 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	K	V	L	T	I	N	I	H	K	G	F	T	A	F	N	R	R	F	I	L	P	E	L	R	D	A	V	R	T	V	S	A	D	I	V	C	L	Q	E	V	M	G	A	H	E	V	H	P	L	H	V	E	N	W	P	D	T	S	H	Y	E	F	L	A	D	T	M	W	S	D	F	A	Y	G	R	N	A	V
Query Conservation
Alig confidence														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	L	R	I	G	Q	I	N	L	G	G	A	.	.	.	.	.	.	E	D	A	T	R	E	L	P	S	I	A	R	D	L	G	L	D	I	V	L	V	Q	E	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	M	V	G	F	L	A
Template Known Secondary structure											T	T		.	.	.	.	.	.						T									T		S						S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T	S	S	S
Template Predicted Secondary structure														.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.							.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																															.	.	.	.	50	.	.	.
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	P	E	G	H	H	G	N	A	V	L	S	R	Y	P	I	E	H	Y	E	N	R	D	V	S	V	D	G	A	E	K	R	G	V	L	Y	C	R	I	V	P	P	M	T	G	K	A	I	H	V	M	C	V	H	L	G	L	R	E	A	H	R	Q	A	Q	L	A	M	L	A	E	W	V	N	E	L	P	D	G	E
Query Conservation
Alig confidence																															.	.	.	.	.	.																																							.	.	.	.
Template Conservation																															.	.	.	.	.	.																																							.	.	.	.
Template Sequence		Q	C	G	A	H	P	K	A	G	V	Y	I	R	N	R	V	L	P	C	A	V	L	H	H	L	S	S	T	H	.	.	.	.	.	.	I	T	V	V	H	I	G	G	W	D	L	Y	M	V	S	A	Y	F	Q	Y	S	D	P	I	D	P	Y	L	H	R	L	G	N	I	L	D	R	L	.	.	.	.	R	G	A
Template Known Secondary structure				S	S	S		S						S	S	T	T	S						G	G	G			S	S	.	.	.	.	.	.							T	T	T	T										T	T	S		S														T	.	.	.	.	T	T	S
Template Predicted Secondary structure																															.	.	.	.	.	.																																							.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120					.	.	.
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200																		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	L	V	A	G	D	F	N	D	W	R	Q	K	A	N	H	P	L	K	V	Q	A	G	L	D	E	I	F	T	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	G	R	P	A	R	T	F	P	V	Q	F	P	L	L	R	L	D	R	I	Y	V	K	N	A	S	A	S	A	P	T
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	V	V	I	C	A	D	T	N	A	H	S	P	L	W	H	S	L	P	R	H	Y	V	G	R	G	Q	E	V	A	D	R	R	A	K	M	E	D	F	I	G	A	R	R	L	V	V	H	N	A	D	G	H	L	P	T	F	S	T	A	N	G	E	S	Y	V	D	V	T	L	S	T	R	G	V	R	V	S	E	W
Template Known Secondary structure														G	G	G	T							S	S	S																		T	T							T	T				S				T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	P	L	R	T	W	R	H	L	S	D	H	A	P	L	S	A	E	I	H
Query Conservation
Alig confidence				.	.	.
Template Conservation				.	.	.
Template Sequence		R	V	.	.	.	T	N	E	S	S	S	D	H	R	L	I	V	F	G	V	G
Template Known Secondary structure				.	.	.		S			S	S	S	B
Template Predicted Secondary structure				.	.	.
Template SS confidence
		204	.				.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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