Job Description P0AAW1 Confidence 99.97% Date Thu Jan 5 11:13:59 GMT 2012 Rank 8 Aligned Residues 233 % Identity 21% Template c1e9nB_ PDB info PDB header:dna repair Chain: B: PDB Molecule:dna-(apurinic or apyrimidinic site) lyase; PDBTitle: a second divalent metal ion in the active site of a new2 crystal form of human apurinic/apyrimidinic endonuclease,3 ape1, and its implications for the catalytic mechanism Resolution 2.2 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	D	Q	T	Q	Q	F	S	F	K	V	L	T	I	N	I	H	K	G	F	T	A	F	N	R	R	F	I	L	P	E	L	R	D	A	V	R	T	V	S	A	D	I	V	C	L	Q	E	V	M	G	A	H	E	V	H	P	L	H	V	E	N	W	P	D	T	S	H	Y	E	F	L	A	D	T	M	W	S	D	F
Query Conservation
Alig confidence																					.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template Sequence		S	P	S	G	K	P	A	T	L	K	I	C	S	W	N	V	D	G	L	.	.	.	.	.	R	A	W	I	K	K	K	G	L	D	W	V	K	E	E	A	P	D	I	L	C	L	Q	E	T	K	C	S	E	N	K	L	P	A	E	L	Q	E	L	P	G	L	S	H	Q	Y	W	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			T	T	S		B											S	S		.	.	.	.	.						T	T											S											S	S	S			G	G	G	T	T		T	T							.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																					.	.	.	.	.																																																.	.	.	.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.						.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	G	R	N	A	V	Y	P	E	G	H	H	G	N	A	V	L	S	R	Y	P	I	E	H	Y	E	N	R	D	V	S	V	D	G	A	E	K	R	G	V	L	Y	C	R	I	V	P	P	M	T	G	K	A	I	H	V	M	C	V	H	L	G	L	R	E	A	H	R	Q	A	Q	L	A	M	L	A	E	W	V
Query Conservation
Alig confidence		.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	S	A	P	S	E	G	Y	S	G	V	G	L	L	S	R	Q	C	P	L	K	V	S	Y	G	I	G	D	E	E	H	D	Q	E	G	R	V	I	V	A	E	F	D	S	F	V	L	V	T	A	Y	V	P	N	A	G	R	G	L	V	R	L	E	Y	R	Q	R	W	D	E	A	F	R	K	F	L
Template Known Secondary structure		.	.	.	.	.							S								S	S			S					S		S		G	G	G	S	S	S									S	S													G	G	G	T	T
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.																						.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.	.	210								.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.								.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.								.	.	.	.	.	.	.
Query Sequence		N	E	L	P	D	G	E	P	V	L	V	A	G	D	F	N	D	W	R	Q	K	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	H	P	L	K	V	Q	A	G	L	D	E	I	F	T	R	A	H	G	R	.	.	P	A	R	T	F	P	V	.	.	.	.	.	.	.	Q
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.								.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.								.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	L	A	S	R	K	P	L	V	L	C	G	D	L	N	V	A	H	E	E	I	D	L	R	N	P	K	G	N	K	K	N	A	G	F	T	P	Q	E	R	Q	G	F	G	E	L	L	Q	A	V	P	L	A	D	S	F	R	H	L	Y	P	N	T	P	Y	A	Y	T	F	W	T	Y	M	M	N	A	R	S	K
Template Known Secondary structure								S									S				S	G	G	G	B	S		S	G	G	G	T	T	S	T	T	S															T	T										T	T			S			S				T	G	G	G	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	P	L	L	R	L	D	R	I	Y	V	K	N	A	S	A	S	A	P	T	A	L	P	L	R	T	W	R	H	L	S	D	H	A	P	L	S	A	E	I	H	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	G	W	R	L	D	Y	F	L	L	S	H	S	L	L	P	A	L	C	D	S	K	I	R	S	K	A	L	G	S	D	H	C	P	I	T	L	Y	L	A	L
Template Known Secondary structure		T												G	G	G	G	G	G								T	T			S	S	S	B
Template Predicted Secondary structure
Template SS confidence
		277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions