Return to main results Retrieve Phyre Job Id

Job DescriptionP39409
Confidence51.81%DateThu Jan 5 12:00:46 GMT 2012
Rank185Aligned Residues139
% Identity16%Templated8ruca1
SCOP infoTIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain
Resolution1.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   134.....140.........150.........160.........170.........180.........190.........200.........210...
Predicted Secondary structure 
















Query SS confidence 















































































Query Sequence  FTAIKNDPQLRHLTCLVDSNGMLSETGWEKLLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSIYLLAERGKLAELRLL
Query Conservation      
      
      


         
    
    


           
     

  
  
      
 
   
Alig confidence 










































.



































Template Conservation 

 



  



 




  



   
   

 
 



 
.


 
   
  
 
 

 
  


 

  


   
Template Sequence  ERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFT. DDENVNSQPFMRWRDRFLFCAEALYKAQAETGEIKG
Template Known Secondary structure  T

SS



SSSS


TT
SB
.

TT
SSBTTB
SS

B
Template Predicted Secondary structure 

















.














Template SS confidence 















































































   158.160.........170.........180.........190.........200 .........210.........220.........230......
 
   214..... 220.........230.........240.........250.........260.........270.........280......
Predicted Secondary structure 





.
























Query SS confidence 





.


































































Query Sequence  VIPGQV. DYLQHIEELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRGVSRLIFPALY
Query Conservation   
   
.
  
 
  
   
       
 
    
 
             
            

  

     
Alig confidence 





.



























.............

























Template Conservation 

 



     
 


  
 
 

   


    .............
  

  
        


 

 
  
Template Sequence  HYLNATAGTCEDMMKRAVFARELGVPIVMHDYLTG. . . . . . . . . . . . . GFTANTTLSHYCRDNGLLLHIHRAMH
Template Known Secondary structure 




SST
S.............
T

TT
Template Predicted Secondary structure 










.............










Template SS confidence 









































































   238.240.........250.........260.........270.. .......280.........290........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions