Return to main results Retrieve Phyre Job Id

Job DescriptionP39409
Confidence69.19%DateThu Jan 5 12:00:46 GMT 2012
Rank146Aligned Residues71
% Identity11%Templated1hx0a2
SCOP infoTIM beta/alpha-barrel (Trans)glycosidases Amylase, catalytic domain
Resolution1.38

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   211........220..... ....230.........240.... .....250.........260.........270.....
Predicted Secondary structure 







.



..............













Query SS confidence 














.


















. . . . . . . . . . . . . .






























Query Sequence  RLLVIPGQVDYLQHI. EELAAFIKGLGDVPVRLNA. . . . . . . . . . . . . . FHAHGVYGEAQSWASATPEDVEPLADALKVR
Query Conservation      
   

  
 
.  
   
       
 
  ..............  
 
             
            
Alig confidence 














.


















..............






























Template Conservation    

   
 
 
  
       
   
  



 
                 
 
  
 
    

  


 

  

  
Template Sequence  RTSIVHLFEWRWVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPVSYKLCTRSGNENEFRDMVTRCNNV
Template Known Secondary structure 

TT

TTTTTT




S
BB

TTTTS
GGGGGSBS
S
S
BTTB
T
Template Predicted Secondary structure 







































Template SS confidence 















































































   10.........20.........30.........40.........50.........60.........70.........80.........
 
   276...280.
Predicted Secondary structure 


Query SS confidence 





Query Sequence  GVSRLI
Query Conservation 

  

Alig confidence 





Template Conservation 

 


Template Sequence  GVRIYV
Template Known Secondary structure  T
Template Predicted Secondary structure 

Template SS confidence 





   90.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions