 |
Job Description | P39409 | Confidence | 67.20% | Date | Thu Jan 5 12:00:46 GMT 2012 |
Rank | 149 | Aligned Residues | 70 |
% Identity | 9% | Template | d1g94a2 |
SCOP info | TIM beta/alpha-barrel
| (Trans)glycosidases
| Amylase, catalytic domain
|
Resolution | 1.74 |
|
 |
  |   |
212 | . | . | . | . | . | . | . | 220 | . | . | . | . | . | |
. | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
|
|
|  |  |  |  | . |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | L | V | I | P | G | Q | V | D | Y | L | Q | H | I | . |
E | E | L | A | A | F | I | K | G | L | G | D | V | P | V | R | L | N | A | F | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
H | A | H | G | V | Y | G | E | A | Q | S | W | A | S | A | T | P | E | D | V | E | P | L | A | D | A | L | K | V | R | G | V | S | R | L |
Query Conservation |   |
  |   |   |
|   |   |   |
|
|   |   |
|   |
| . |   |   |
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |   | . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|   |
|
|   |   |   |
|
|   |   |
|
|
|   |
|
|   |   |   |
|   |   |
|
|   |
|
|
Template Sequence |   |
T | T | F | V | H | L | F | E | W | N | W | Q | D | V | A | Q | E | C | E | Q | Y | L | G | P | K | G | Y | A | A | V | Q | V | S | P | P | N | E | H | I | T | G | S | Q | W | W | T | R | Y | Q | P | V | S | Y | E | L | Q | S | R | G | G | N | R | A | Q | F | I | D | M | V | N | R | C | S | A | A | G | V | D | I | Y |
Template Known Secondary structure |   |
|
|  |  |  |  | T | T |
|
|  |  |  |  |  |  |  |  |  |  | T |  |  |  |  | T |
|
|  |  |  |  |
|
|
| S |
| B | B |
| S | S | S | G | G | G | G | G | S | B | S |
| S |
| S |
| B | T | T | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
  |
  |   |
281 |
Predicted Secondary structure |   |
 |
Query SS confidence |   |
|
Query Sequence |   |
I |
Query Conservation |   |
|
Alig confidence |   |
|
Template Conservation |   |
|
Template Sequence |   |
V |
Template Known Secondary structure |   |
 |
Template Predicted Secondary structure |   |
 |
Template SS confidence |   |
|
  |   |
83 |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|