Job Description P39409 Confidence 48.71% Date Thu Jan 5 12:00:46 GMT 2012 Rank 191 Aligned Residues 172 % Identity 13% Template c3qguB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii Resolution 1.55 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																														.	.
Query SS confidence																														.	.
Query Sequence		V	D	E	V	L	S	H	V	R	K	A	V	L	F	I	E	G	I	T	V	S	G	G	E	A	T	T	Q	.	.	L	P	F	V	V	A	L	F	T	A	I	K	N	D	P	Q	L	R	H	L	T	C	L	V	D	S	N	G	M	L	S	E	T	G	W	E	K	L	L	P	V	C	D	G	A	M	L	D	L	K
Query Conservation																														.	.
Alig confidence																														.	.																						.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.
Template Sequence		I	A	R	R	R	K	A	H	Q	E	K	N	P	D	A	K	I	I	S	L	G	I	G	D	T	T	E	P	L	P	K	Y	I	A	D	A	M	A	K	A	A	A	G	L	A	T	R	E	G	Y	S	.	.	.	.	.	.	G	Y	G	A	E	Q	G	Q	G	A	L	R	E	A	V	A	S	T	F	Y	G	H	A
Template Known Secondary structure														T	T							S	S	S																					G	G	G	S					.	.	.	.	.	.		S	S		T	T															T	T	T
Template Predicted Secondary structure																																																					.	.	.	.	.	.
Template SS confidence
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.							.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.																							.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	W	G	S	E	C	H	Q	Q	L	T	G	R	D	N	Q	Q	I	K	R	S	I	Y	L	L	A	E	R	G	K	L	A	E	L	R	L	L	V	I	P	G	Q	V	D	Y	L	Q	H	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	L	A	A	F	I	K	G
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation							.	.
Template Sequence		G	R	A	A	D	.	.	E	I	F	I	S	D	G	S	K	C	D	I	A	R	I	Q	M	M	F	G	S	K	P	T	V	A	V	Q	D	P	S	Y	P	V	Y	V	D	T	S	V	M	M	G	M	T	G	D	H	N	G	T	G	F	D	G	I	E	Y	M	V	C	N	P	D	N	H	F	F	P	D	L	S	K
Template Known Secondary structure		T			G	G	.	.	G					S															S	S	S							S			T									T	T		S			B		S	S	S	B	T	T								G	G	G	T	T				T	T	S
Template Predicted Secondary structure							.	.
Template SS confidence
		129	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		235	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		L	G	D	V	P	V	R	L	N	.	.	A	F	H	A	H	G	V	Y	G	E	A	Q	S	W	A	S	A	T	P	E	D	V	E	P	L	A	D	A	L	K	V	R	G	V	S	R	L	I	F	P	A	L	Y
Query Conservation											.	.
Alig confidence											.	.									.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.
Template Sequence		A	K	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A	A	.	.	.	.	.	.	.	.	A	T	R	A	Q	L	T	E	L	V	N	F	A	R	K	N	G	S	I	L	V	Y	D	A	A	Y	A
Template Known Secondary structure						S						S	S		T	T	T				.	.	.	.	.	.	.	.																	T								T	T	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.									.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions