Return to main results Retrieve Phyre Job Id

Job DescriptionP39409
Confidence86.50%DateThu Jan 5 12:00:46 GMT 2012
Rank88Aligned Residues73
% Identity19%Templatec3k8kB_
PDB info PDB header:membrane proteinChain: B: PDB Molecule:alpha-amylase, susg; PDBTitle: crystal structure of susg
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   209210.........220. ........230.........240.........250 .........260.........270....
Predicted Secondary structure 







.......









.......






Query SS confidence 












. . . . . . .




























. . . . . . .























Query Sequence  ELRLLVIPGQVDY. . . . . . . LQHIEELAAFIKGLGDVPVRLNAFHAHGV. . . . . . . YGEAQSWASATPEDVEPLADALKV
Query Conservation   
    
   

 ....... 
 
  
   
       
 
    
 
 .......            
           
Alig confidence 












.......




























.......























Template Conservation 


 
    
 
    
 


 

  





 





 
 

       

   

  


  

  


 

  

 
Template Sequence  ISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCXSYHGYDVTDYTKVNPQLGTESDFDRLVTEAHN
Template Known Secondary structure 

TTTS

SSSSSS

TTTT
S


S
BSSTT

SBS
TTS

TTT

Template Predicted Secondary structure 











































Template SS confidence 















































































   62.......70.........80.........90.........100.........110.........120.........130.........140.
 
   275....280.
Predicted Secondary structure 



Query SS confidence 






Query Sequence  RGVSRLI
Query Conservation   

  

Alig confidence 






Template Conservation   

 


Template Sequence  RGIKIYL
Template Known Secondary structure  TT
Template Predicted Secondary structure 


Template SS confidence 






   142......
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions