 |
| Job Description | P39409 | | Confidence | 27.21% | Date | Thu Jan 5 12:00:46 GMT 2012 |
| Rank | 279 | Aligned Residues | 64 |
| % Identity | 20% | Template | c2d0gA_ |
| PDB info |
PDB header:hydrolase | Chain: A: PDB Molecule:alpha-amylase i; |
PDBTitle: crystal structure of thermoactinomyces vulgaris r-47 alpha-2 amylase 1 (tvai) mutant d356n/e396q complexed with p5, a3 pullulan model oligosaccharide
|
| Resolution | 2.60 Å |
|
| | |
218 | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | |
. | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | |
|
|
|
. | . | . | 280 | . |
| Predicted Secondary structure | |
|
|
|
|  | | | | | | | | | | | | | . |
|
|
|  | | | | |  |
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
| | | | |
|
|
|
|
| | | | | | | | | | | | | |
|
| . | . | . | . |
|
| | | |
| Query SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
|
|
|
|
|
| Query Sequence | |
Q | V | D | Y | L | Q | H | I | E | E | L | A | A | F | I | K | G | . |
L | G | D | V | P | V | R | L | N | A | F | H | A | H | G | V | Y | . |
. |
. |
. |
. |
. |
. |
G | E | A | Q | S | W | A | S | A | T | P | E | D | V | E | P | L | A | D | A | L | K | V | R | G | . |
. |
. |
. |
V | S | R | L | I |
| Query Conservation | |
|
|
| | |
| |
| | |
| | | |
| | | . | | | | | |
| |
| | | | |
| |
| | | . | . | . | . | . | . | . | | | | | | | | | | | |
| | | | | | | | | | | | |
| . | . | . | . |
| | |
|
|
| Alig confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
| Template Conservation | |
|
|
|
|
| |
|
| | |
|
|
|
|
| |
| |
|
|
| | |
| |
| |
|
| | | | | | | |
|
|
| | |
|
| | |
|
| | | |
|
| |
|
|
|
| |
|
| | | |
| | |
|
|
| | |
| |
|
|
|
| Template Sequence | |
F | G | G | D | L | A | G | I | D | Q | K | L | G | Y | I | K | K | T | L | G | A | N | I | L | Y | L | N | P | I | F | K | A | P | T | N | H | K | Y | D | T | Q | D | Y | M | A | V | D | P | A | F | G | D | N | S | T | L | Q | T | L | I | N | D | I | H | S | T | A | N | G | P | K | G | Y | L | I | L |
| Template Known Secondary structure | |
|
|
|
| | | | | | | T | | | | | | T | T | T |
|
|
| | | | | S |
|
| | |
| S | S | S | S |
|
| S |
| S | | | | | |
| T | T | T |
|
| | | | | | | | | | | | |
| S | S | S | S | S |
|
| | | | |
| Template Predicted Secondary structure | |
|
|
|
| | | | | | | | | | | | | | |
|
|
|
| | | | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | | | | | | | | | | | | |
|
|
|
|
|
| | | | | |
| Template SS confidence | |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| | |
186 | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . |
| |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
| |
|
|
|
