Job Description P46130 Confidence 97.15% Date Thu Jan 5 12:04:05 GMT 2012 Rank 20 Aligned Residues 238 % Identity 10% Template d1rmga_ SCOP info Single-stranded right-handed beta-helix Pectin lyase-like Galacturonase Resolution 2.00

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																																							.	.
Query SS confidence																																							.	.
Query Sequence		A	G	T	Q	G	V	T	H	T	T	I	Q	A	A	V	D	A	A	I	I	K	R	T	N	K	R	Q	Y	I	A	V	M	P	G	E	Y	Q	.	.	G	T	V	Y	V	P	A	A	P	G	G	I	T	L	Y	G	T	G	E	K	P	I	D	V	K	I	G	L	S	L	D	G	G	M	S	P	A	D	W	R	H
Query Conservation																																							.	.
Alig confidence							.																	.	.	.	.	.											.	.						.													.	.	.	.
Template Conservation							.																	.	.	.	.	.																		.													.	.	.	.
Template Sequence		D	N	S	T	D	.	V	G	P	A	I	T	S	A	W	A	A	C	K	S	G	G	.	.	.	.	.	L	V	Y	I	P	S	G	N	Y	A	L	N	T	W	V	T	L	.	T	G	G	S	A	T	A	I	Q	L	D	G	.	.	.	.	I	I	Y	R	T	G	T	A	S	G	N	M	I	A	V	T	D	T	T
Template Known Secondary structure		S	S	S	S	B	.													T	B	T		.	.	.	.	.						S	S						S					.		S										S	.	.	.	.									S	S
Template Predicted Secondary structure							.																	.	.	.	.	.																		.													.	.	.	.
Template SS confidence
		31	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.						.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80					.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	N	P	R	G	K	Y	M	P	G	K	P	A	W	Y	M	Y	D	S	C	Q	S	K	R	S	D	S	I	G	V	L	C	S	A	V	F	W	S	Q	N	N	G	L	Q	L	Q	N	L	T	I	E	N	T	L	G	D	S	V	D	A	G	N	H	P	A	V	A	L	R	T	D	G	D	Q	V	Q	I	N	N
Query Conservation
Alig confidence																														.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template Sequence		D	F	E	L	F	S	S	T	S	K	G	A	V	Q	G	F	G	Y	V	Y	H	A	E	G	T	Y	G	A	.	.	.	.	.	R	I	L	R	L	T	D	V	T	H	F	S	V	H	D	I	I	L	V	D	A	P	A	F	H	F	.	.	.	.	.	.	.	.	.	T	M	D	T	C	S	D	G	E	V	Y	N
Template Known Secondary structure								S	S	S								T					T	T	T					.	.	.	.	.																						S	S		S		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																														.	.	.	.	.																											.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.						.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.										.	.	.	.	.	.	160	.	.	.	.	.
		245	.	.	.	.	250					.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.				.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.																																							.	.	.
Query SS confidence								.	.	.	.																																							.	.	.
Query Sequence		V	N	I	L	G	R	.	.	.	.	Q	N	T	F	F	V	T	N	S	G	V	Q	N	R	L	E	T	N	R	Q	P	R	T	L	V	T	N	S	Y	I	E	G	D	V	D	I	V	S	.	.	.	G	R	G	A	V	V	F	D	N	T	E	F	R	V	V	N	S	R	T	Q	Q	E	A	Y	V	F	A	P	A
Query Conservation								.	.	.	.																																							.	.	.
Alig confidence								.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.														.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template Sequence		M	A	I	R	G	G	N	E	G	G	L	D	G	I	D	V	.	.	.	.	.	.	.	.	.	.	.	.	W	G	S	N	I	W	V	H	D	V	E	V	T	N	K	D	E	C	V	T	V	K	S	P	A	N	N	I	L	V	E	S	I	Y	C	N	.	.	.	.	.	.	W	S	G	G	C	A	M	G	S	L
Template Known Secondary structure								S	S	T	T			S				.	.	.	.	.	.	.	.	.	.	.	.														S	S	S																					.	.	.	.	.	.	S	S	S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.													.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	S	N	I	Y	Y	G	F	L	A	V	N	S	R	F	N	A	F	G	D	G	V	A	Q	L	G	R	S	L	D	V	D	A	N	T	N	G	Q	V	V	I	R	D	S	A	I	N	E	G	F	N	T
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		G	A	D	T	D	V	T	D	I	V	Y	R	N	V	Y	T	W	S	S	N	Q	M	Y	M	I	K	.	.	.	S	N	G	G	S	G	T	V	S	N	V	L	L	E	N	F	I	G	H	G	N	A	Y	S
Template Known Secondary structure			T	T															S	S	S		S					.	.	.		B	B																			S		S
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.				.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions