Job Description P46130 Confidence 96.55% Date Thu Jan 5 12:04:05 GMT 2012 Rank 22 Aligned Residues 224 % Identity 12% Template c3gq8A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:preneck appendage protein; PDBTitle: crystal structure of the bacteriophage phi29 gene product2 12 n-terminal fragment in complex with 2-(n-3 cyclohexylamino)ethane sulfonic acid (ches) Resolution 2.00 Å

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		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.			.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure																											.	.
Query SS confidence																											.	.
Query Sequence		A	A	V	D	A	A	I	I	K	R	T	N	K	R	Q	Y	I	A	V	M	P	G	E	Y	Q	.	.	G	T	V	Y	V	P	A	A	P	G	G	I	T	L	Y	G	T	G	E	K	P	I	D	V	K	I	G	L	S	L	D	G	G	M	S	P	A	D	W	R	H	D	V	N	P	R	G	K	Y	M	P	G	K
Query Conservation																											.	.
Alig confidence														.	.	.	.										.	.									.	.	.										.	.
Template Conservation														.	.	.	.																				.	.	.										.	.
Template Sequence		R	A	F	E	K	A	I	E	S	G	F	P	.	.	.	.	V	Y	V	P	Y	G	T	F	M	V	S	R	G	I	K	L	P	S	N	.	.	.	T	V	L	T	G	A	G	K	R	.	.	N	A	V	I	R	F	M	D	S	V	G	R	G	E	S	L	M	Y	N	E	N	V	T	T	G	N	E	N	I	F	L
Template Known Secondary structure										T	S	S		.	.	.	.					S						S	S						S	S	.	.	.						S		T	T	.	.	T							T	T			S	S			S				S		T	T	T
Template Predicted Secondary structure														.	.	.	.																				.	.	.										.	.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.				.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		177	.	.	180	.	.	.	.				.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure										.	.	.
Query SS confidence										.	.	.
Query Sequence		P	A	W	Y	M	Y	D	S	.	.	.	C	Q	S	K	R	S	D	S	I	G	V	L	C	S	A	V	F	W	S	Q	N	N	G	L	Q	L	Q	N	L	T	I	E	N	T	L	G	D	S	V	D	A	G	N	H	P	A	V	A	L	R	T	D	G	D	Q	V	Q	I	N	N	V	N	I	L	G	R	Q	N	T
Query Conservation										.	.	.
Alig confidence										.	.	.																																					.	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.	.
Template Sequence		S	S	F	T	L	D	G	N	N	K	R	L	G	Q	G	I	S	G	I	G	G	S	R	E	S	N	L	S	I	R	A	C	H	N	V	Y	I	R	D	I	E	A	V	D	C	T	L	.	.	.	.	.	.	.	.	H	G	I	D	I	T	C	G	G	L	D	Y	P	Y	L	G	D	G	T	T	A	P	N	P	S
Template Known Secondary structure										G	G	G	G		S	S				S	S	T	T	T	T		S					S													S		S	S	.	.	.	.	.	.	.	.		S						S	S	S	S						T	T				S	S
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.									240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure																																		.	.	.
Query SS confidence																																		.	.	.
Query Sequence		F	F	V	T	N	S	G	V	Q	N	R	L	E	T	N	R	Q	P	R	T	L	V	T	N	S	Y	I	E	G	D	V	D	.	.	.	I	V	S	G	R	G	A	V	V	F	D	N	T	E	F	R	V	V	N	S	R	T	Q	Q	E	A	Y	V	F	A	P	A	T	L	S	N	I	Y	Y	G	F	L	A	V	N
Query Conservation																																		.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.																																			.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template Sequence		E	N	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	I	E	N	C	E	A	T	G	F	G	D	D	G	I	T	T	H	H	S	Q	Y	I	N	I	L	N	C	Y	S	H	D	P	R	L	T	A	N	C	N	G	F	E	I	D	D	G	S	R	.	.	.	.	.	H	V	V	L	S	N
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S					S		S	S		S					S								S							S	S		S	S			S					T	T			.	.	.	.	.						S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template SS confidence
		265	.	.																		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.						.	.	.	320	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	F	N	A	F	G	D	G	V	A	Q	L	G	R	S	L	D	V	D	A	N	T	N	G	Q	V	V	I	R	D	S	A	I
Query Conservation
Alig confidence																.	.	.
Template Conservation																.	.	.
Template Sequence		N	R	S	K	G	C	Y	G	G	I	E	I	K	A	.	.	.	H	G	D	A	P	A	A	Y	N	I	S	I	N	G	H	M	S
Template Known Secondary structure						S	S	S								.	.	.		T	T	S
Template Predicted Secondary structure																.	.	.
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.				.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions