Job Description P46130 Confidence 92.80% Date Thu Jan 5 12:04:05 GMT 2012 Rank 32 Aligned Residues 221 % Identity 19% Template c2vjjA_ PDB info PDB header:viral protein Chain: A: PDB Molecule:tailspike protein; PDBTitle: tailspike protein of e.coli bacteriophage hk620 in complex2 with hexasaccharide Resolution 1.59 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.														.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.								.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Query Sequence		I	Q	A	A	V	D	A	A	I	I	K	R	T	N	K	R	Q	Y	I	A	V	M	P	G	E	Y	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T	V	Y	V	P	A	A	P	G	G	I	T	L	Y	G	T	G	.	.	.	.	.	.	.	E	K	P	I	D	V	K	I	G	L	S	L	D	G	G
Query Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.	.	.	.	.
Alig confidence																.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.						.	.												.	.	.	.	.	.	.
Template Conservation																.	.	.																													.	.
Template Sequence		L	Q	A	A	I	D	Y	V	S	S	N	G	G	G	.	.	.	T	I	T	I	P	A	G	Y	T	W	Y	L	G	S	Y	G	V	G	G	I	A	G	H	S	G	I	I	Q	.	.	L	R	S	N	V	N	L	N	I	E	G	R	I	H	L	S	P	F	F	D	L	K	P	F	Q	V	F	V	G	F	D	N	G
Template Known Secondary structure												T	T			.	.	.						T	T							S				G	G	G	G	G	G	T					.	.			T	T							S						G	G	G	T	T	S									S	S	S
Template Predicted Secondary structure																.	.	.																													.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.				190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	P	A	D	W	R	H	D	V	N	P	R	G	K	Y	M	P	G	K	P	A	W	Y	M	Y	D	S	C	Q	S	K	R	S	D	S	I	G	V	L	C	S	A	V	F	W	S	Q	N	N	G	L	Q	L	Q	N	L	T	I	E	N	T	L	G	D	S	V	D	A	G	N	H	P	A	V	A	L	R	T	D
Query Conservation
Alig confidence							.	.																																						.	.	.	.	.	.												.	.	.	.	.
Template Conservation							.	.																																						.	.	.	.	.	.												.	.	.	.	.
Template Sequence		D	P	A	S	S	.	.	G	N	L	E	N	C	H	I	Y	G	H	G	V	V	D	F	G	G	Y	E	F	G	A	S	S	Q	L	R	N	G	V	A	F	G	R	S	Y	.	.	.	.	.	.	N	C	S	V	T	G	I	T	F	Q	N	.	.	.	.	.	G	D	V	T	W	A	I	T	L	G	W	N	G	Y
Template Known Secondary structure		S	G	G	G		.	.										S	S						T	T				S		T	T										S			.	.	.	.	.	.						S					S	.	.	.	.	.				S		S					B	T	T	B
Template Predicted Secondary structure							.	.																																						.	.	.	.	.	.												.	.	.	.	.
Template SS confidence
		251	.	.	.	.			.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.							.	.	.	.	.	.	.	300	.	.	.						.	.	.	.	.	.	310	.	.	.	.	.	.	.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.										.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.										.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Query Sequence		G	D	Q	V	Q	I	N	N	V	N	I	L	G	R	Q	N	T	.	.	.	.	.	.	.	.	.	F	F	V	T	N	S	G	V	Q	N	R	L	E	T	N	R	Q	P	R	T	L	V	T	N	S	Y	I	E	G	D	V	D	I	V	S	G	R	G	.	.	.	.	.	.	.	.	.	A	V	V	F	D	N	T
Query Conservation																			.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.			.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.			.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		G	S	N	C	Y	V	R	K	C	R	F	I	N	L	V	N	S	S	V	N	A	D	H	S	T	V	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	N	C	P	Y	S	G	V	E	S	C	Y	F	S	M	S	S	S	F	A	.	.	R	N	I	A	C	S	V	E	L	H	Q	H	D	T	F	Y	R	G
Template Known Secondary structure									S										S	S										.	.	.	.	.	.	.	.	.	.	.	.	.		S	S	S					S								T	T		.	.											S	S	S					S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.														.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.			.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
		299	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		E	F	R	V	V	N	S	R	T	Q	Q	E	A	Y	V	F	A	P	A	T	L	S	N	I	Y	.	Y	G	F	L	A	V	N	S	R	F	N	A	F	G	D	G	V	A	Q	L	G	R	S	L	D	V	D	A	N	T	N	G	Q	V	V	I	R	D	S	A	I	N	E	G	F
Query Conservation																											.
Alig confidence																											.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		S	T	V	N	G	Y	C	R	G	A	Y	V	V	M	H	A	A	E	A	A	G	A	G	S	Y	A	Y	N	M	Q	V	E	N	N	I	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	I	Y	G	Q	F	V	I	L	G	S	D	V	T	A	T	V
Template Known Secondary structure								S									G	G	G		T	T	T		S									S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S									B		S	S
Template Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		383	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.																			.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions