Job Description P46130 Confidence 98.44% Date Thu Jan 5 12:04:05 GMT 2012 Rank 12 Aligned Residues 233 % Identity 13% Template c2pyhB_ PDB info PDB header:isomerase Chain: B: PDB Molecule:poly(beta-d-mannuronate) c5 epimerase 4; PDBTitle: azotobacter vinelandii mannuronan c-5 epimerase alge4 a-module2 complexed with mannuronan trisaccharide Resolution 2.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.							.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.
Query Sequence		P	A	G	T	Q	G	V	T	H	T	T	I	Q	A	A	V	D	A	A	I	I	K	R	T	N	K	R	Q	Y	I	A	V	M	P	G	E	Y	Q	G	T	V	Y	V	P	A	A	.	.	.	.	.	.	P	G	G	I	T	L	Y	G	T	G	E	K	P	I	D	V	K	I	G	L	S	L	D	G	G	M	S	P
Query Conservation																																																.	.	.	.	.	.
Alig confidence								.																			.	.	.																			.	.	.	.	.	.
Template Conservation								.																			.	.	.
Template Sequence		G	D	G	V	S	D	.	D	R	A	S	I	Q	A	A	I	D	A	A	Y	A	A	G	G	G	.	.	.	T	V	Y	L	P	A	G	E	Y	R	V	S	A	A	G	E	P	G	D	G	C	L	M	L	K	D	G	V	Y	L	A	G	A	G	M	G	E	T	V	I	K	L	I	D	G	S	D	Q	K	I	T	G
Template Known Secondary structure								.															T	T			.	.	.						S									S	S	G	G	G		S					T	T						S	S	T	T	T							T	T		B	S		B	S
Template Predicted Secondary structure								.																			.	.	.
Template SS confidence
		12	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.				.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	W	R	H	D	V	N	P	R	G	K	Y	M	P	G	K	P	A	W	Y	M	Y	D	S	C	Q	S	K	R	S	D	S	I	G	V	L	C	S	A	V	F	W	S	Q	N	N	G	L	Q	L	Q	N	L	T	I	E	N	T	L	G	D	S	V	D	A	G	N	H	P	A	V	A	L	R	T	D	G	D	Q
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.
Template Sequence		M	V	R	S	A	Y	G	E	E	T	S	N	F	G	M	R	D	L	T	L	D	G	N	R	D	N	T	S	G	K	V	D	G	W	F	N	G	Y	I	P	G	G	D	G	A	D	R	D	V	T	I	E	R	V	E	V	R	E	M	S	G	.	.	.	.	.	.	.	.	Y	G	F	D	P	H	E	Q	T	I	N
Template Known Secondary structure		S					T	T																	G	G	G		B	S		B		S					S		T	T	S	S																	S	S	.	.	.	.	.	.	.	.		S					S
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.	.	.
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.					.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.
Query SS confidence																																													.	.	.	.
Query Sequence		V	Q	I	N	N	V	N	I	L	G	R	Q	N	T	F	F	V	T	N	S	G	V	Q	N	R	L	E	T	N	R	Q	P	R	T	L	V	T	N	S	Y	I	E	G	.	.	.	.	D	V	D	I	V	S	G	R	G	A	V	V	F	D	N	T	E	F	R	V	V	N	S	R	T	Q	Q	E	A	Y	V	F	A
Query Conservation																																													.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.															.	.	.	.																			.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template Sequence		L	T	I	R	D	S	V	A	H	D	N	G	L	D	G	F	V	A	D	.	.	.	.	.	.	.	.	.	.	Y	L	V	D	S	V	F	E	N	N	V	A	Y	A	N	D	R	H	G	F	N	V	V	T	S	T	H	D	F	V	M	T	N	N	V	A	.	.	.	Y	G	N	G	S	S	G	L	V	V	Q	R
Template Known Secondary structure						S					S		S	S		S					.	.	.	.	.	.	.	.	.	.	S								S					S		S	S		S					S	S								S				.	.	.		S		S	S		S
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.																																					.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.											.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	T	L	S	N	I	Y	Y	G	F	L	A	V	N	S	R	F	N	A	F	G	D	G	V	A	Q	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	E	D	L	A	L	P	S	N	I	L	I	D	G	G	A	Y	Y	D	N	A	R	E	G	V	L	L
Template Known Secondary structure			S	S	S											S					S		S	S		S
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions