Job Description P46130 Confidence 98.93% Date Thu Jan 5 12:04:05 GMT 2012 Rank 6 Aligned Residues 141 % Identity 13% Template c1dbgA_ PDB info PDB header:lyase Chain: A: PDB Molecule:chondroitinase b; PDBTitle: crystal structure of chondroitinase b Resolution 1.70 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.					.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.	.	.	.
Query SS confidence																																																					.	.	.	.
Query Sequence		V	V	G	P	A	G	T	Q	G	V	T	H	T	T	I	Q	A	A	V	D	A	A	I	I	K	R	T	N	K	R	Q	Y	I	A	V	M	P	G	E	Y	Q	G	T	V	Y	V	P	A	A	P	G	.	.	.	.	G	I	T	L	Y	G	T	G	E	K	P	I	D	V	K	I	G	L	S	L	D	G	G	M	S
Query Conservation																																																					.	.	.	.
Alig confidence						.	.	.	.	.	.	.																.	.	.	.	.																					.	.	.	.					.	.												.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.																.	.	.	.	.																													.	.												.	.	.	.	.	.	.	.
Template Sequence		V	V	A	S	.	.	.	.	.	.	.	N	E	T	L	Y	Q	V	V	K	E	V	K	P	G	G	.	.	.	.	.	L	V	Q	I	A	D	G	T	Y	K	D	V	Q	L	I	V	S	N	S	G	K	S	G	L	P	I	T	I	.	.	K	A	L	N	P	G	K	V	F	F	T	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	.	.	.	.	.	.	.													T	T		.	.	.	.	.						S					T										B	T	T	B					.	.			S	S	T	T	S					.	.	.	.	.	.	.	.
Template Predicted Secondary structure						.	.	.	.	.	.	.																.	.	.	.	.																													.	.												.	.	.	.	.	.	.	.
Template SS confidence
		27	.	.	30								.	.	.	.	.	.	.	.	.	40	.	.	.	.	.						.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.	80	.	.	.	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	D	W	R	H	D	V	N	P	R	G	K	Y	M	P	G	K	P	A	W	Y	M	Y	D	S	C	Q	S	K	R	S	D	S	I	G	V	L	C	S	A	V	F	W	S	Q	N	N	G	L	Q	L	Q	N	L	T	I	E	N	T	L	G	D	S	V	D	A	G	N	H	P	A	V	A	L	R	T	D	G	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	D	A	K	V	E	L	R	G	E	H	L	I	L	E	G	I	W	F	K	D	G	N	R	A	I	Q	A	W	K	S	H	G	P	G	L	V	A	I	Y	G	S
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S							S	S	S					S										T	T	T			T	T	S			S					S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																								85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	V	Q	I	N	N	V	N	I	L	G	R	Q	N	T	F	F	V	T	N	S	G	V	Q	N	R	L	E	T	N	R	Q	P	R	T	L	V	T	N	S	Y	I	E	G	D	V
Query Conservation
Alig confidence														.
Template Conservation														.
Template Sequence		Y	N	R	I	T	A	C	V	F	D	C	F	.	D	E	A	N	S	A	Y	I	T	T	S	L	T	E	D	G	K	V	P	Q	H	C	R	I	D	H	C	S	F	T	D	K	I
Template Known Secondary structure		S					S					S		.		S	S		S		S							T	T						S					S
Template Predicted Secondary structure														.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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