Job Description P0CE45 Confidence 99.95% Date Thu Jan 5 11:30:13 GMT 2012 Rank 1 Aligned Residues 414 % Identity 12% Template d1pv7a_ SCOP info MFS general substrate transporter MFS general substrate transporter LacY-like proton/sugar symporter Resolution 3.60

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Q	L	S	W	R	T	I	V	G	Y	S	L	G	D	V	A	N	N	F	A	F	A	M	G	A	L	F	L	L	S	Y	Y	T	D	V	A	G	V	G	A	A	A	A	G	T	M	L	L	L	V	R	V	F	D	A	F	A	D	V	F	A	G	R	V	V	D	S	V	N	T	R	W	G	K	F	R	P	F	L
Query Conservation
Alig confidence																																																																											.	.	.	.
Template Conservation																																																																											.	.	.	.
Template Sequence		Y	Y	L	K	N	T	N	F	W	M	F	G	L	F	F	F	F	Y	F	F	I	M	G	A	Y	F	P	F	F	P	I	W	L	H	D	I	N	H	I	S	K	S	D	T	G	I	I	F	A	A	I	S	L	F	S	L	L	F	Q	P	L	F	G	L	L	S	D	K	L	G	L	R	K	.	.	.	.	Y	L	L
Template Known Secondary structure						S																																																					T												T	T		T	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	F	G	T	A	P	L	M	I	F	S	V	L	V	F	W	V	P	T	D	W	S	H	G	S	K	V	V	Y	A	Y	L	T	Y	M	G	L	G	L	C	Y	S	L	V	N	I	P	Y	G	S	L	A	T	A	M	T	Q	Q	P	Q	S	R	A	R	L	G	A	A	R	G	I	A	A	S	L	T	F	V	C	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	I	I	T	G	M	L	V	M	F	A	P	F	F	I	F	I	F	G	P	L	L	Q	Y	N	I	L	V	G	S	I	V	G	G	I	Y	L	G	F	C	F	N	A	G	A	P	A	V	E	A	F	I	E	K	V	S	R	R	S	N	F	E	F	G	R	A	R	M	F	G	C	V	G	W	A	L	G	A	S	I
Template Known Secondary structure										T								T							T	T								T	T	T	T	G	G	G	G	G	T	T																	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	L	I	G	P	S	I	K	N	S	S	P	E	E	M	V	S	V	Y	H	F	W	T	I	V	L	A	I	A	G	M	V	L	Y	F	I	C	F	K	S	T	R	E	N	V	V	R	I	V	A	Q	P	S	L	N	I	S	L	Q	T	L	K	R	N	R	P	L	F	M	L	C	I	G	A	L	C	V	L	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	G	I	M	F	T	I	N	N	Q	F	V	F	W	L	G	S	G	C	A	L	I	L	A	V	L	L	F	F	A	K	T	D	A	P	S	S	A	T	V	A	N	A	V	G	A	N	H	S	A	F	S	L	K	L	A	L	E	L	F	R	Q	P	K	L	W	F	L	S	L	Y	V	I	G	V	S	C	T	Y	D
Template Known Secondary structure																														S	S				S		S	S	S		S	S					S														T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	T	F	A	V	S	A	S	S	L	F	Y	V	R	Y	V	L	N	D	T	G	L	F	T	V	L	V	L	V	Q	N	L	V	G	T	V	A	S	A	P	L	V	P	G	M	V	A	R	I	G	K	K	N	T	F	L	I	G	A	L	L	G	T	C	G	Y	L	L	F	F	W	V	S	V	W	S	L	P	V	A
Query Conservation
Alig confidence																																																																									.	.
Template Conservation																																																																									.	.
Template Sequence		V	F	D	Q	Q	F	A	N	F	F	T	S	F	F	A	T	G	E	Q	G	T	R	V	F	G	Y	V	T	T	M	G	E	L	L	N	A	S	I	M	F	F	A	P	L	I	I	N	R	I	G	G	K	N	A	L	L	L	A	G	T	I	M	S	V	R	I	I	G	S	S	F	.	.	A	T	S	A	L	E	V
Template Known Secondary structure												T	T	S	S	S																									T	T																														T	.	.
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.			.	310	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.		.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		L	V	A	L	A	I	A	S	I	G	Q	G	V	T	M	T	V	M	W	A	L	E	A	D	T	V	E	Y	G	E	Y	L	T	G	V	R	I	E	G	L	T	Y	S	L	.	F	S	F	T	R	K	C	G	Q	A	I	G	G	S	I	P	A	F	I	L	G	L	S	G	Y	I	A	N	Q	V	Q	T	P	E	V
Query Conservation																																														.
Alig confidence																												.	.	.	.	.	.	.												.																									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	I	L	K	T	L	H	M	F	E	V	P	F	L	L	V	G	C	F	K	Y	I	T	S	Q	F	.	.	.	.	.	.	.	E	V	R	F	S	A	T	I	Y	L	V	C	F	C	F	F	K	Q	L	A	M	I	F	M	S	V	L	A	G	N	M	Y	E	S	I	G	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																											S	.	.	.	.	.	.	.		G	G	G										T	T	T																					.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.								.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	M	G	I	R	T	S	I	A	L	V	P	C	G	F	M	L	L	A	F	V	I	I	W	F	Y	P	L	T	D	K	K	F	K	E	I	V	V	E	I	D	N	R
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	F	Q	G	A	Y	L	V	L	G	L	V	A	L	G	F	T	L	I	S	V	F	T	L	S	G	P	G	P	L	S	L	L	R	R	Q	V	N	E	V
Template Known Secondary structure		.	.	.	.																							S			S	S		T	T
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.