Job Description P0AG07 Confidence 51.47% Date Thu Jan 5 11:27:45 GMT 2012 Rank 494 Aligned Residues 193 % Identity 11% Template c3rlhA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:sphingomyelin phosphodiesterase d lisictox-alphaia1a; PDBTitle: crystal structure of a class ii phospholipase d from loxosceles2 intermedia venom Resolution 1.72 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																			.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.											60	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Query Sequence		R	L	G	E	D	T	A	K	A	L	A	A	G	A	D	V	V	H	F	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	N	H	Y	V	P	N	L	T	I	G	P	M	V	L	K	S	L	R	N	Y	.	.	.	.	.	.	.	.	.	.	G	I	T	A	P	I	D	V	H
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	A	I	G	Q	I	D	E	F	V	N	L	G	A	N	S	I	E	T	D	V	S	F	D	D	N	A	N	P	E	Y	T	Y	H	G	I	P	C	D	C	G	R	N	C	K	K	Y	E	N	F	N	D	F	L	K	G	L	R	S	A	T	T	P	G	N	S	K	Y	Q	E	K	L	V	L	V	V	F	D	L	K
Template Known Secondary structure			S										T	T		S								B		T	T	S		B		B					S	S			T	T	S		S					B												T	S	T	T	S	T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		69	70	.	.	.																.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.									.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		L	M	V	K	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	R	I	V	P	D	F	A	A	A	G	A	S	I	I	T	F	H	P	E	A	S	E	H	.	.	.	.	.	.	.	.	V	D	R	T	L	Q	L	I	K	E	N	G	C	K	A	G	L	V	F	N	P	A	T	P	L	S	Y
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	S	L	Y	D	N	Q	A	N	D	A	G	K	K	L	A	K	N	L	L	Q	H	Y	W	N	N	G	N	N	G	G	R	A	Y	I	V	L	S	I	P	D	L	N	H	Y	P	L	I	K	G	F	K	D	Q	L	T	K	D	G	H	P	E	L	M	D	K	V	G	H	D	F	S	G	N	D	D	I	G	D
Template Known Secondary structure		G	G	G	S		G	G	G																T	S	G	G	G	S	S											S		G	G	G	T													T	T		G	G	G	G	G	G							S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150		.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		L	D	Y	V	M	D	K	L	D	V	I	L	L	M	S	V	N	P	G	F	G	G	Q	S	F	.	I	P	Q	T	L	D	K	L	R	E	V	R	R	R	I	D	E	S	G	F	D	I	R	L	E	V	D	G	G	V	K	V	N	N	I	G	E	I	A	A	A	G	A	D	M	F	V	A	G	S	A	I	F	D
Query Conservation																											.
Alig confidence																											.																										.	.																					.	.	.	.	.	.	.
Template Conservation																																																					.	.																					.	.	.	.	.	.	.
Template Sequence		V	G	K	A	Y	K	K	A	G	I	T	G	H	I	W	Q	S	D	G	I	T	N	C	L	P	R	G	L	S	R	V	N	A	A	V	A	N	R	D	S	A	N	G	F	I	N	K	V	Y	Y	W	.	.	T	V	D	K	R	S	T	T	R	D	A	L	D	A	G	V	D	G	I	M	.	.	.	.	.	.	.
Template Known Secondary structure										T			S										T	T	S				S											T	S	T	T				S						.	.				S											T		S				.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.																					.	.	.	.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.			230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		205	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	D	Y	K	K	V	I	D	E	M	R	S	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	N	Y	P	D	V	I	T	D	V	L	N	E	A
Template Known Secondary structure			S										T	S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions