Job Description P0AG07 Confidence 67.78% Date Thu Jan 5 11:27:45 GMT 2012 Rank 450 Aligned Residues 184 % Identity 14% Template c3mz2A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of a glycerophosphoryl diester phosphodiesterase2 (bdi_3922) from parabacteroides distasonis atcc 8503 at 1.55 a3 resolution Resolution 1.55 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																																							.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	A	R	L	G	E	D	T	A	K	A	L	A	A	G	A	D	V	V	H	F	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	D	N	H	Y	V	P	N	L	T	I	G	P	M	V	L	K	S	L
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	E	N	S	X	E	T	F	E	N	T	L	S	Y	T	P	A	T	F	E	I	D	P	R	L	T	K	D	S	V	I	V	L	F	H	D	D	T	L	E	R	T	S	N	G	T	G	K	V	S	D	Y	T	W	E	E	L	Q	N	F	R	L	K	D	P	E	G	N	I	T	N	Y	R	I	P	T	L	E	E	A
Template Known Secondary structure			T	T																								T	T								S	S	S	S	T	T	T	B	S			S		G	G	G	S						T	T	S		B	B		T	T			B		S					B
Template Predicted Secondary structure
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
		57	.	.	60	.	.		.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.		.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure								.																											.
Query SS confidence								.																											.
Query Sequence		R	N	Y	G	I	T	.	A	P	I	D	V	H	L	M	V	K	P	V	D	R	I	V	P	D	F	A	A	A	G	A	S	I	.	I	T	F	H	P	E	A	S	E	H	V	D	R	T	L	Q	L	I	K	E	N	G	C	K	A	G	L	V	F	N	P	A	T	P	L	S	Y	L	D	Y	V	M	D	K	L	D
Query Conservation								.																											.
Alig confidence								.																											.								.	.	.	.
Template Conservation																																											.	.	.	.
Template Sequence		I	R	W	A	R	G	K	T	I	L	I	L	D	K	K	D	V	P	X	E	R	T	A	Q	L	I	T	D	X	Q	A	E	P	Y	V	X	I	T	V	H	D	.	.	.	.	G	A	S	A	R	F	F	Y	E	K	N	P	N	F	X	F	E	A	F	V	K	T	K	E	A	V	Q	D	Y	E	D	N	G	I	P
Template Known Secondary structure						T	T	T								S	S	S												T	T		T	T	T						S	S	.	.	.	.												T	T									S										T	T
Template Predicted Secondary structure																																											.	.	.	.
Template SS confidence
		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190					.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180									.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.
Query Sequence		V	I	L	L	M	S	V	N	P	G	F	G	G	Q	S	F	I	P	Q	T	L	D	K	L	R	E	V	R	R	R	I	D	E	S	G	F	D	I	R	L	E	V	D	G	G	V	.	.	.	.	.	.	.	.	K	V	N	N	I	G	E	I	A	A	A	G	A	D	M	F	V	A	G	S	A	I	F	D	Q	P
Query Conservation																																																.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Conservation										.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Template Sequence		W	S	H	I	X	A	Y	V	.	.	.	.	.	.	.	.	G	P	K	I	T	P	E	V	R	E	V	I	D	X	L	H	E	R	G	V	X	C	X	I	S	T	A	P	S	D	D	K	L	S	T	P	E	S	R	A	E	A	Y	R	X	I	I	R	Q	G	V	D	I	I	E	.	.	.	.	.	.	.	S	D
Template Known Secondary structure		G	G	G						.	.	.	.	.	.	.	.		S	S															T	T	B							T	T	T	G	G	G	S	S	S														T	T						.	.	.	.	.	.	.		S
Template Predicted Secondary structure										.	.	.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.									.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.								.	290
		207	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Y	K	K	V	I	D	E	M	R	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	I	E	V	A	E	A	I	S	S
Template Known Secondary structure											G	G
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions