Job Description P0AG07 Confidence 68.68% Date Thu Jan 5 11:27:45 GMT 2012 Rank 448 Aligned Residues 215 % Identity 14% Template c3ju2A_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein smc04130; PDBTitle: crystal structure of protein smc04130 from sinorhizobium meliloti 1021 Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.		.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure																																																.																												.	.	.	.	.	.
Query SS confidence																																																.																												.	.	.	.	.	.
Query Sequence		M	K	Q	Y	L	I	A	P	S	I	L	S	A	D	F	A	R	L	G	E	D	T	A	K	A	L	A	A	G	A	D	V	V	H	F	D	V	M	D	N	H	Y	V	P	N	L	.	T	I	G	P	M	V	L	K	S	L	R	N	Y	G	I	T	A	P	I	D	V	H	L	M	V	K	P	.	.	.	.	.	.
Query Conservation																																																.																												.	.	.	.	.	.
Alig confidence																	.																				.	.	.	.	.	.						.																												.	.	.	.	.	.
Template Conservation																	.																				.	.	.	.	.	.
Template Sequence		V	E	G	L	S	I	N	L	A	T	I	R	E	Q	C	.	G	F	A	E	A	V	D	I	C	L	K	H	G	I	T	A	I	A	P	.	.	.	.	.	.	W	R	D	Q	V	A	A	I	G	L	G	E	A	G	R	I	V	R	A	N	G	L	K	L	T	G	L	C	R	G	G	F	F	P	A	P	D	A	S
Template Known Secondary structure			T	T					G	G	G	G	T	T	T		.												T	T							.	.	.	.	.	.	B																			T	T				S											S	S
Template Predicted Secondary structure																	.																				.	.	.	.	.	.
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.							.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
										74	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.																.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.										.	.	120	.
Predicted Secondary structure		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	V	D	R	I	V	P	D	F	A	A	A	G	A	S	I	I	T	F	H	P	E	A	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	V	D	R	T	L	Q	L	I	K	E	N	G	C	K	A	G	L	V	F	.	.	.	.	.	.	.	.	.	N	P	A	T
Query Conservation		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	E	K	A	I	D	D	N	R	R	A	V	D	E	A	A	E	L	G	A	D	C	L	V	L	V	A	G	G	L	P	G	G	S	K	N	I	D	A	A	R	R	M	V	V	E	G	I	A	A	V	L	P	H	A	R	A	A	G	V	P	L	A	I	E	P	L	H	P	M	Y	A	A	D	R	A	C	V	N
Template Known Secondary structure																					T	B	S							B				T	T																										T										G	G	G	T	T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.													.	170	.	.	.	.	.	.	.	.	.	180	.		.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.														.
Query Sequence		P	L	S	Y	L	D	Y	V	M	D	K	L	D	V	I	L	L	M	S	V	N	P	G	F	G	G	Q	S	F	I	P	Q	T	L	D	K	L	R	E	V	R	R	R	I	D	E	S	.	.	.	.	.	.	.	.	.	.	.	.	G	F	D	I	R	L	E	V	D	G	G	V	K	.	V	N	N	I	G	E	I
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.	.	.														.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation
Template Sequence		T	L	G	Q	A	L	D	I	C	E	T	L	G	P	G	V	G	V	A	I	D	V	Y	H	V	W	W	D	P	D	L	A	N	Q	I	A	R	A	G	K	M	K	A	I	L	A	H	H	I	C	D	W	L	V	P	T	K	D	M	L	T	D	R	G	M	M	G	D	G	V	I	D	L	K	G	I	R	R	R	I
Template Known Secondary structure															T	T											T	T		T	T											T	T									B			S	S				S	S	S	B		B		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200					.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure														.	.	.	.
Query SS confidence														.	.	.	.
Query Sequence		A	A	A	G	A	D	M	F	V	A	G	S	.	.	.	.	A	I	F	D	Q	P	D	Y	K	K	V	I	D	E	M	R	S	E	L	A	K	V
Query Conservation														.	.	.	.
Alig confidence														.	.	.	.
Template Conservation
Template Sequence		E	A	A	G	F	H	G	A	Q	E	V	E	I	F	S	A	D	N	W	W	K	R	P	A	D	E	V	I	A	T	C	V	E	R	Y	R	N	C
Template Known Secondary structure				T	T											B	T	T	T	G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions