Job Description P0AG07 Confidence 76.95% Date Thu Jan 5 11:27:45 GMT 2012 Rank 415 Aligned Residues 175 % Identity 15% Template c2v9dB_ PDB info PDB header:lyase Chain: B: PDB Molecule:yage; PDBTitle: crystal structure of yage, a prophage protein belonging to2 the dihydrodipicolinic acid synthase family from e. coli3 k12 Resolution 2.15 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.						.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.				.	.	80	.	.	.
Predicted Secondary structure																																															.	.	.	.	.																						.	.	.
Query SS confidence																																															.	.	.	.	.																						.	.	.
Query Sequence		S	A	D	F	A	R	L	G	E	D	T	A	K	A	L	A	A	G	A	D	V	V	H	F	D	V	M	D	N	H	Y	V	P	N	L	T	I	G	P	M	V	L	K	S	L	.	.	.	.	.	R	N	Y	G	I	T	A	P	I	D	V	H	L	M	V	K	P	V	D	R	I	.	.	.	V	P	D	F	A	A
Query Conservation																																															.	.	.	.	.																						.	.	.
Alig confidence																											.	.	.																		.	.	.	.	.																						.	.	.
Template Conservation																											.	.	.
Template Sequence		Q	L	D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	.	.	.	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	T	I	E	L	S	Q	H	A	Q	Q
Template Known Secondary structure		S	B															T	T		S					S	.	.	.	S	T	T	T	T	G	G	G	S																	T	T	S	S								S	S
Template Predicted Secondary structure																											.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.				.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		84	.	.	.	.	.	90	.	.	.						.	.	.	.	.	.	100	.	.	.	.	.	.		.	.	.	110	.	.	.	.	.	.	.	.	.	120	.						.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure												.	.	.	.	.														.																.	.	.	.	.
Query SS confidence												.	.	.	.	.														.																.	.	.	.	.
Query Sequence		A	G	A	S	I	I	T	F	H	P	.	.	.	.	.	E	A	S	E	H	V	D	R	T	L	Q	L	I	.	K	E	N	G	C	K	A	G	L	V	F	N	P	A	T	.	.	.	.	.	P	L	S	Y	L	D	Y	V	M	D	K	L	D	V	I	L	L	M	S	V	N	P	G	F	G	G	Q	S	F	I	P
Query Conservation												.	.	.	.	.														.																.	.	.	.	.
Alig confidence												.	.	.	.	.														.																.	.	.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.
Template Sequence		A	G	A	D	G	I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	N	L	I	R	Y	F	E	Q	V	A	D	S	V	T	L	P	V	X	L	Y	N	F	P	A	L	T	G	Q	D	L	T	P	A	L	V	K	T	L	A	D	S	R	S	N	I	I	G	I	.	.	.	.	.	.	.	.	.	K	D	T	I
Template Known Secondary structure			T		S								S	S	S																			S	S												S																T	T					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.										.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	T	L	D	K	L	R	E	V	R	R	R	I	D	E	S	G	F	D	I	R	L	E	V	D	G	G	V	K	V	N	N	I	G	E	I	A	A	A	G	A	D	M	F	V	A	G	S	A
Query Conservation
Alig confidence																												.	.	.
Template Conservation																												.	.	.
Template Sequence		D	S	V	A	H	L	R	S	X	I	H	T	V	K	G	A	H	P	H	F	T	V	L	C	G	Y	.	.	.	D	D	H	L	F	N	T	L	L	L	G	G	D	G	A	I	S	A	S	G
Template Known Secondary structure		S																	T	T						S	S	.	.	.	G	G	G							T	T							G	G	G
Template Predicted Secondary structure																												.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.				.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions