Job Description P76000 Confidence 9.09% Date Thu Jan 5 12:17:10 GMT 2012 Rank 53 Aligned Residues 121 % Identity 10% Template d1kmoa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.00

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	R	A	D	V	A	A	E	L	R	S	L	R	R	Y	Y	H	L	S	N	G	M	E	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	X	E	P	W	L	K	A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	N	D	G	N	F	V
Query Conservation
Alig confidence																																											.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.
Template Sequence		V	S	I	Y	A	S	Y	A	Y	V	N	A	E	I	R	E	K	G	D	T	Y	G	N	L	V	P	F	S	P	K	H	K	G	T	L	G	V	D	Y	K	P	.	.	.	.	.	.	.	.	.	G	N	W	T	F	N	L	N	S	D	F	Q	S	S	Q	F	A	D	N	A	N	T	V	K	E	S	A	D	G	S
Template Known Secondary structure																	S	S	S	T	T	T	T		B		T	T			S												.	.	.	.	.	.	.	.	.	T	T													B		S	S	T	T				S			T	T	S	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.
Template SS confidence
		604	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.										.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.															.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	L	S	G	R	R	G	I	Y	Q	A	A	I	K	A	S	F	S	.	.	.	S	T	F	S	G	H	L	G	V	G	Y	S	H	G	A	G	V	E	S	P	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	V	A	G	V	N	W	S	F
Query Conservation																					.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	R	I	P	G	F	M	L	W	G	A	R	V	A	Y	D	F	G	P	Q	M	A	D	L	N	L	A	F	G	V	K	N	I	F	D	Q	D	Y	F	I	R	S	Y	D	D	N	N	K	G	I	Y	A	G	Q	P	R	T	L	Y	M	Q	G	S	L	K	F
Template Known Secondary structure		S	S		B																T	T	T	T										S	T	T										S	S	T	T									S
Template Predicted Secondary structure
Template SS confidence
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions