Job Description P76000 Confidence 3.99% Date Thu Jan 5 12:17:10 GMT 2012 Rank 62 Aligned Residues 131 % Identity 7% Template d1fepa_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.40

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	L	R	C	L	F	R	M	N	P	L	V	W	C	L	R	A	D	V	A	A	E	L	R	S	L	R	R	Y	Y	H	L	S	N	G	M	E	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	X	E	P	W	L	K	A	A	V	R	K	E	F	V
Query Conservation
Alig confidence																																		.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.																				.	.	.	.	.	.
Template Sequence		L	E	G	S	L	N	V	P	V	S	E	T	V	X	W	T	N	N	I	T	Y	X	L	K	S	E	N	K	T	T	G	D	.	.	.	.	.	.	.	R	L	S	I	I	P	E	Y	T	L	N	S	T	L	S	W	Q	A	R	.	.	.	.	.	.	E	D	L	S	X	Q	T	T	F	T	W	Y	G	K	Q	Q
Template Known Secondary structure												T	T																T	T	T			.	.	.	.	.	.	.		S	S				S													.	.	.	.	.	.	T	T													B
Template Predicted Secondary structure																																		.	.	.	.	.	.	.																				.	.	.	.	.	.
Template SS confidence
		566	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.								.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.							.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.		.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure																				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	N	R	V	K	V	N	N	D	G	N	F	V	N	D	L	S	.	G	R	R	G	I	Y	Q	A	A	I	K	A	S	F	S	S	T	F	S	G	H	L	G	V	G	Y	S	H	G	A	G	V	E	S	P	W	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	K	K	Y	N	Y	K	G	Q	P	A	V	G	P	E	T	K	E	I	S	P	Y	S	I	V	G	L	S	A	T	W	D	V	T	K	N	V	S	L	T	G	G	V	D	N	L	F	D	K	R	L	W	R	A	G	N	A	Q	T	T	G	D	L	A	G	A	N	Y	I	A	G	A	G	A	Y	T	Y	N	E	P
Template Known Secondary structure				S	B		T	T	S		B			G	G	G	G			B															S	S	S									S	T	T				B				S		S	S					T	T	S	S	S						T	T					B
Template Predicted Secondary structure
Template SS confidence
		633	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.
				138	.	140	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	N	A	V	A	G	V	N	W	S	F
Query Conservation		.	.
Alig confidence		.	.
Template Conservation
Template Sequence		G	R	T	W	Y	X	S	V	N	T	H	F
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		713	.	.	.	.	.	.	720	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions