Job Description P76000 Confidence 39.31% Date Thu Jan 5 12:17:10 GMT 2012 Rank 39 Aligned Residues 129 % Identity 11% Template d1by5a_ SCOP info Transmembrane beta-barrels Porins Ligand-gated protein channel Resolution 2.60

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	H	L	R	C	L	F	R	M	N	P	L	V	W	C	L	R	A	D	V	A	A	E	L	R	S	L	R	R	Y	Y	H	L	S	N	G	M	E	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	X	E	P	W	L	K	A	A	V	R	K	E	F	V
Query Conservation
Alig confidence																	.	.																													.	.	.	.
Template Conservation																	.	.																													.	.	.	.
Template Sequence		V	E	I	E	A	K	R	P	L	S	A	S	V	N	V	.	.	V	G	S	Y	T	Y	T	D	A	E	Y	T	T	D	T	T	Y	K	G	N	T	P	A	Q	V	P	K	H	.	.	.	.	M	A	S	L	W	A	D	Y	T	F	F	D	G	P	L	S	G	L	T	L	G	T	G	G	R	Y	T	G	S	S	Y
Template Known Secondary structure										S	S	S	S				.	.															T	T	T	T	T				T	T			S		.	.	.	.												S	S	T	T	T	T
Template Predicted Secondary structure																	.	.																													.	.	.	.
Template SS confidence
		570	.	.	.	.	.	.	.	.	.	580	.	.	.	.			.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.					.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.													.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	D	N	R	V	K	V	N	N	D	G	N	F	V	N	D	L	S	G	R	R	G	I	Y	Q	A	A	I	K	A	S	F	S	S	.	.	.	.	T	F	S	G	H	L	G	V	G	Y	S	H	G	A	G	V	E	S	P	W	.	.	.	.	.	.	.	.	.	.	.	.	N	A	V	A	G	V	N	W	S	F
Query Conservation																																				.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.	.	.	.	.	.	.																						.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.	.	.	.	.	.	.
Template Sequence		G	D	P	A	.	.	.	.	.	.	.	.	.	N	S	F	K	V	G	S	Y	T	V	V	D	A	L	V	R	Y	D	L	A	R	V	G	M	A	G	S	N	V	A	L	H	V	N	N	L	F	D	R	E	Y	V	A	S	C	F	N	T	Y	G	C	F	W	G	A	E	R	Q	V	V	A	T	A	T	F	R	F
Template Known Secondary structure		S	S	T	T	.	.	.	.	.	.	.	.	.			S																T	T	T	T	T		T	T									S	T	T											T	T
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.
Template SS confidence
		644	.	.	.										.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions