Job Description P76000 Confidence 97.11% Date Thu Jan 5 12:17:10 GMT 2012 Rank 19 Aligned Residues 138 % Identity 8% Template c2wjqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form. Resolution 2.00 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.									.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.
Query Sequence		I	H	L	R	C	L	F	R	M	N	P	L	V	W	C	L	R	A	D	V	A	A	E	L	R	S	L	R	R	Y	Y	H	L	S	N	G	M	E	S	K	S	V	D	T	R	S	I	Y	R	E	L	G	A	T	L	S	Y	N	M	R	L	G	N	G	M	E	X	E	P	.	.	.	.	.	.	.	.	W	L	K
Query Conservation																																																																							.	.	.	.	.	.	.	.
Alig confidence																										.	.	.																				.	.																						.	.	.	.	.	.	.	.
Template Conservation																										.	.	.																				.	.
Template Sequence		V	E	V	N	Y	A	I	K	L	D	D	Q	W	T	V	R	P	G	M	L	T	H	F	S	.	.	.	S	N	G	T	R	Y	G	P	Y	V	K	L	S	W	D	A	T	K	D	.	.	L	N	F	G	I	R	Y	R	Y	D	W	K	A	Y	R	Q	Q	D	L	S	G	D	M	S	R	D	N	V	H	R	W	D
Template Known Secondary structure										S	S	S	S													.	.	.	T	T															S	S	S	.	.													S	S					T	T	S
Template Predicted Secondary structure																										.	.	.																				.	.
Template SS confidence
		57	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80				.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.							.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.																																				.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.																																				.	.	.	.	.	.
Query Sequence		A	A	V	R	K	E	F	V	D	D	N	R	V	K	V	N	.	.	.	.	.	.	N	D	G	N	F	V	N	D	L	S	G	R	R	G	I	Y	Q	A	A	I	K	A	S	F	S	S	T	F	S	G	H	L	G	V	G	.	.	.	.	.	.	Y	S	H	G	A	G	V	E	S	P	W	N	A	V	A	G	V
Query Conservation																		.	.	.	.	.	.																																				.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.																																				.	.	.	.	.	.
Template Conservation
Template Sequence		G	Y	V	T	Y	H	I	N	S	D	F	T	F	A	W	Q	T	T	L	Y	S	K	Q	N	D	Y	R	Y	A	N	H	K	K	W	A	T	E	N	A	F	V	L	Q	Y	H	M	T	P	D	I	T	P	Y	I	E	Y	D	Y	L	D	R	Q	G	V	Y	N	G	R	D	N	L	S	E	N	S	Y	R	I	G	V
Template Known Secondary structure									S	S	S													S	S	S				T	T	S	S	S													S	B	T	T												S					T	T
Template Predicted Secondary structure
Template SS confidence
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
		144	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	W	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	F	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		212	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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