 |
Job Description | P76000 | Confidence | 86.81% | Date | Thu Jan 5 12:17:10 GMT 2012 |
Rank | 35 | Aligned Residues | 131 |
% Identity | 12% | Template | c2iahA_ |
PDB info |
PDB header:membrane protein | Chain: A: PDB Molecule:ferripyoverdine receptor; |
PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
|
Resolution | 2.73 Å |
|
 |
  |   |
4 | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | H | L | R | C | L | F | R | M | N | P | L | V | W | C | L | R | A | D | V | A | A | E | L | R | S | L | R | R | Y | Y | H | L | S | N | G | M | E | S | K | S | V | D | T | R | S | I | Y | R | E | L | G | A | T | L | S | Y | N | M | R | L | G | N | G | M | E | X | E | P | W | L | K | A | A | V | R | K | E | F | V |
Query Conservation |   |
  |   |   |   |   |   |
|   |
|   |   |   |   |   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |
|   |   |
|   |   |
|
|
|   |
|   |   |   |   |   |   |
|
|   |
|
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |   |   |   |   |   |   |   |   | . | . |   |   |   |
|   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . |   |   |   |   |   |   |   |   |   |
|   |   |   |
Template Sequence |   |
Y | E | A | E | I | S | G | E | L | A | P | G | W | Q | V | Q | . |
. |
A | G | Y | T | H | K | I | I | R | D | D | S | G | . |
. |
. |
. |
. |
. |
. |
. |
K | K | V | S | T | W | E | P | Q | D | Q | L | S | L | Y | T | S | Y | K | F | K | G | A | L | D | . |
. |
. |
K | L | T | V | G | G | G | A | R | W | Q | G | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  | . | . |  |  |  |  |  |
|
|  |  |
| S | S | S | . | . | . | . | . | . | . | . |
| B |
|
| T | T | S |
| S |  |  |  |  |  |  |  |  |  |  |
|
| G | G | G | T | . | . | . | T |  |  |  |  |  |  |  |  |  |  |
|
|
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
| . | . | . |
|  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
673 | . | . | . | . | . | . | 680 | . | . | . | . | . | . | . | . | |
|
. | 690 | . | . | . | . | . | . | . | . | . | 700 | . | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | 710 | . | . | . | . | . | . | . | . | . | 720 | . | . | . | . | . | . | |
|
|
. | . | . | 730 | . | . | . | . | . | . | . | . | . |
  |
  |   |
84 | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | 140 | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
D | D | N | R | V | K | V | N | N | D | G | N | F | V | N | D | L | S | G | R | R | G | I | Y | Q | A | A | I | K | A | S | F | S | S | T | F | S | G | H | L | G | V | G | Y | S | H | G | A | G | V | E | S | P | W | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
N | A | V | A | G | V | N | W | S | F |
Query Conservation |   |
  |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |   |
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |
|
|   |
|
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|
|   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |
|   |
|
|   |
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |   |
|   |   |   |
|   |
|
Template Sequence |   |
S | W | Q | M | V | Y | N | N | P | R | S | R | W | E | K | F | S | Q | E | D | Y | W | L | V | D | L | M | A | R | Y | Q | I | T | D | K | L | S | A | S | V | N | V | N | N | V | F | D | K | T | Y | Y | T | N | I | G | F | Y | T | S | A | S | Y | G | D | P | R | N | L | M | F | S | T | R | W | D | F |
Template Known Secondary structure |   |
 |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |
| S | S | S |
|  |  |  |  |  |  |  | S | T | T |
|
|
|
|  |  |  |
| T | G | G | G |  |  |  |  |
|
|
| S |  |  |  |  |  |  |  |
|
|
|
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
740 | . | . | . | . | . | . | . | . | . | 750 | . | . | . | . | . | . | . | . | . | 760 | . | . | . | . | . | . | . | . | . | 770 | . | . | . | . | . | . | . | . | . | 780 | . | . | . | . | . | . | . | . | . | 790 | . | . | . | . | . | . | . | . | . | 800 | . | . | . | . | . | . | . | . | . | 810 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|