Job Description P0CK95 Confidence 48.04% Date Wed Jan 25 15:20:37 GMT 2012 Rank 25 Aligned Residues 203 % Identity 12% Template c3qnfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:endoplasmic reticulum aminopeptidase 1; PDBTitle: crystal structure of the open state of human endoplasmic reticulum2 aminopeptidase 1 erap1 Resolution 3.00 Å

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		1215	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	Y	T	G	G	L	E	Q	F	A	N	D	L	D	T	F	A	S	S	M	N	D	F	Y	G	R	D	S	E	D	G	K	H	R	M	F	T	Y	K	N	L	P	G	H	K	H	R	F	T	N	D	V	Q	I	S	I	G	D	A	H	S	G	Y	P	V	M	N	S	S	F	S	P	N	S	T	T	L	P	T	T
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		D	K	I	N	Q	A	D	Y	A	L	D	A	A	V	T	L	L	E	F	Y	E	D	Y	F	S	I	P	.	.	.	.	.	.	.	.	Y	P	L	P	K	Q	D	L	A	A	I	P	D	F	Q	S	G	A	M	E	N	.	.	.	.	W	G	L	T	T	Y	R	E	S	A	L	L	F	D	A	E	K	S	S	A
Template Known Secondary structure		T	T	G	G	G	G																			T	S		.	.	.	.	.	.	.	.		S	S	S								T	T			S	S					.	.	.	.	T	T						G	G	G	T				T	T	T	S		T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300									.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.					.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.
		1295	.	.	.				.	1300	.	.	.	.	.	.	.					.	.	1310	.	.	.	.	.	.	.	.	.		1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340				.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.
Predicted Secondary structure						.	.	.										.	.	.	.													.																						.	.	.
Query SS confidence						.	.	.										.	.	.	.													.																						.	.	.
Query Sequence		P	L	N	D	.	.	.	W	L	I	W	H	E	V	G	H	.	.	.	.	N	A	A	E	T	P	L	T	V	P	G	A	.	T	E	V	A	N	N	V	L	A	L	Y	M	Q	D	R	Y	L	G	K	M	N	.	.	.	R	V	A	D	D	I	T	V	A	P	E	Y	L	E	E	S	N	N	Q	A	W	A	R
Query Conservation						.	.	.										.	.	.	.													.																						.	.	.
Alig confidence						.	.	.										.	.	.	.													.																						.	.	.
Template Conservation
Template Sequence		S	S	K	L	G	I	T	M	T	V	A	H	E	L	A	H	Q	W	F	G	N	L	V	T	M	E	W	W	N	D	L	W	L	N	E	G	F	A	K	F	M	E	F	V	S	V	S	V	T	H	P	E	L	K	V	G	D	Y	F	F	G	K	C	F	D	A	M	E	V	D	A	L	N	S	S	H	P	V	S	T
Template Known Secondary structure		T																		B	T	T	T				S	S	G	G	G																					G	G	G																		T	S	T	T				S	S
Template Predicted Secondary structure
Template SS confidence
		342	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
		1364	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	G	A	G	D	R	L	L	M	Y	A	Q	L	K	E	W	A	E	K	N	F	D	I	K	K	W	Y	P	D	G	T	P	L	P	E	F	Y	S	E	R	E	G	M	K	G	W	N	L	F	Q	L	M	H	R	K	A	R	G	D	E	V	S	N	D	K	F	G	G	K	N	Y	C	A	E	S	N	G	N	A	A
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	V	E	N	D	D	V	S	Y	D	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	A	C	I	L	N	M	L	R	E	Y	L	S	A	D	A	F	K	S	G	I	V	Q	Y	L	Q	K	H	S	Y	K	.	.	.	.	.	.	.	.	.	.	.	.	N	T	K	N	E
Template Known Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S																T	T	T		.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		422	.	.	.	.	.	.	.	430	.	.																						.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.													.	.	.	.	.
		1444	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	L	M	L	C	A	S	W	V	A	Q	T	D	L	S	E	F	F	K	K	W
Query Conservation
Alig confidence										.	.	.
Template Conservation										.	.	.
Template Sequence		D	L	W	D	S	M	A	S	.	.	.	I	V	D	V	K	T	M	M	N	T	W
Template Known Secondary structure								T	T	.	.	.
Template Predicted Secondary structure										.	.	.
Template SS confidence
		477	.	.	480	.	.	.	.				.	.	.	.	.	490	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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