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Job DescriptionP0CK95
Confidence85.57%DateWed Jan 25 15:20:37 GMT 2012
Rank2Aligned Residues209
% Identity12%Templatec3ebhA_
PDB info PDB header:hydrolase inhibitorChain: A: PDB Molecule:m1 family aminopeptidase; PDBTitle: structure of the m1 alanylaminopeptidase from malaria complexed with2 bestatin
Resolution1.65 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1215....1220.........1230.........1240.........1250.........1260.........1270... ......1280.........1290...
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Query Sequence  NYTGGLEQFANDLDTFASSMNDFYGRDSEDGKHRMFTYKNLPGHKHRFTNDVQISIGDA. HSGYPVMNSSFSPNSTTLPT
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Template Sequence  KYVSKLQWALECLKKSMAFDEDYFGLE. . . . . . . . YDLSRLNLVAVSDFN. . . . . VGAMENKGLNIFNANSLLASKKNSI
Template Known Secondary structure  GGGGGG


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   417..420.........430.........440... ......450........ .460.........470.........480...
 
   1294..... 1300.........1310.........1320... ......1330...... ...1340.........1350.........1360.
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Query Sequence  TPLNDW. . . LIWHEVGHNAAETPLTVPGATEVA. NNVLALYMQDRYL. . . . . . . . GKMNRVADDITVAPEYLEESNNQAW
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Template Sequence  DFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTVTTRLSHVDLLRSVQFLEDSSPLSHPI
Template Known Secondary structure  TTTTBTTTBSSGGG

TTSTT


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   484.....490.........500.........510.........520.........530.........540.........550.........560...
 
   1362.......1370.........1380.........1390.........1400......... 1410.........1420.........1430.........1440
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Query Sequence  ARGGAGDRLLMYAQLKEWAEKNFDIKKWYPDGTPLPEFYSEREGMKGW. NLFQLMHRKARGDEVSNDKFGGKNYCAESNG
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Template Sequence  RPESYVSMENFYTTT. . . . . . . . . . . . VYDKGSEVMRMYLTI. . . LGEEYYKKGFDIYIKKNDGNTAT. . . . . . . . . . . .
Template Known Secondary structure  S
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GGG


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   564.....570........ .580.........590... ......600.........610......
 
   1441........1450.........1460. ....
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Query Sequence  NAADTLMLCASWVAQTDLSEF. . . . . . FKKW
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Template Sequence  . . CEDFNYAMEQAYKMKKADNSANLNQYLLW
Template Known Secondary structure  ..T
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   617..620.........630.........640.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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