Job Description P66948 Confidence 98.75% Date Thu Jan 5 12:10:22 GMT 2012 Rank 87 Aligned Residues 168 % Identity 10% Template c3ulqA_ PDB info PDB header:gene regulation/transcription activator Chain: A: PDB Molecule:response regulator aspartate phosphatase f; PDBTitle: crystal structure of the anti-activator rapf complexed with the2 response regulator coma dna binding domain Resolution 2.30 Å

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		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	R	A	A	Q	Y	G	R	A	L	Q	A	M	E	A	N	K	Y	D	E	A	R	K	T	L	Q	P	L	L	A	A	E	P	G	N	A	W	Y	L	D	L	A	T	D	I	D	L	G	Q	N	K	A	N	E	A	I	N	R	L	K	N	A	R	D	L	R	T	N	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	I	G	E	K	I	N	E	W	Y	M	Y	I	R	R	F	S	I	P	D	A	E	Y	L	R	R	E	I	K	Q	E	L	D	Q	M	E	E	D	Q	D	L	H	L	Y	Y	S	L	M	E	F	R	H	N	L	M	L	E	Y	L	E	P	L	E	K	M	R	I	E	E	Q	P	R	L	S	D	L	L	L	E	I
Template Known Secondary structure																T	T																		T	S																									G	G	G	G	G	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
														376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	P	V	L	Q	L	N	L	A	N	A	Y	L	Q	G	G	Q	P	Q	E	A	A	N	I	L	N	R	Y	T	F	N	N	K	D	D	S	N	G	W	D	L	L	A	Q	A	E	A	A	L	N	N	R	D	Q	E	L	A	A	R	A	E	G	Y	A	L	A	G	R	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	K	K	Q	A	R	L	T	G	L	L	E	Y	Y	F	N	F	F	R	G	M	Y	E	L	D	Q	R	E	Y	L	S	A	I	K	F	F	K	K	A	E	S	K	L	I	F	V	K	D	R	I	.	.	.	.	.	.	.	.	.	.	.	E	K	A	E	F	F	F	K	M	S	E	S	Y	Y	Y	M	K	Q	T
Template Known Secondary structure					T																						T	T														T	T	G	G	G						.	.	.	.	.	.	.	.	.	.	.																T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.												.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	Q	A	I	S	L	L	S	S	A	S	S	Q	V	K	L	G	S	L	Q	Q	A	R	Y	D	A	R	I	D	Q	L	R	Q	L	Q	E	R	F	K	P	Y	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	F	S	M	D	Y	A	R	Q	A	Y	E	I	Y	K	E	H	E	A	Y	N	I	R	L	L	Q	C	H	S	L	F	A	T	N	F	L	D	L	K	Q	Y	E	D
Template Known Secondary structure																	T		S	T	T																		T	T
Template Predicted Secondary structure
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions