Job Description P66948 Confidence 86.99% Date Thu Jan 5 12:10:22 GMT 2012 Rank 125 Aligned Residues 129 % Identity 17% Template c3mkqB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	A	M	E	A	N	K	Y	D	E	A	R	K	T	L	Q	P	L	L	A	A	E	P	G	N	A	W	Y	L	D	L	A	T	D	I	D	L	G	Q	N	K	A	N	E	A	I	N	R	L	K	N	A	R	D	L	R	T	N	P	V	L	Q	L	N	L	A	N	A	Y	L	Q	G	G	Q	P	Q	E	A	A	N
Query Conservation
Alig confidence																				.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	L	E	Y	G	N	L	D	A	A	L	D	E	A	K	K	L	.	.	.	.	.	N	D	S	I	T	W	E	R	L	I	Q	E	A	L	A	Q	G	N	A	S	L	A	E	M	I	Y	Q	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	H	S	F	D	K	L	S	F
Template Known Secondary structure						T	T													.	.	.	.	.																T	T												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T
Template Predicted Secondary structure																				.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		655	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.						.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700																					.	.	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	L	N	R	Y	T	F	N	N	K	D	D	S	N	G	W	D	L	L	A	Q	A	E	A	A	L	N	N	R	D	Q	E	L	A	A	R	A	E	G	Y	A	L	A	G	R	L	D	Q	A	I	S	L	L	S	S	A	S	S	Q	V	K	L	G	S	L	Q	Q	A	R	Y	D	A	R	I	D	Q	L	R	Q	L
Query Conservation
Alig confidence							.	.	.	.	.																										.	.	.	.																	.	.	.	.	.	.
Template Conservation							.	.	.	.	.																										.	.	.	.																	.	.	.	.	.	.
Template Sequence		L	Y	L	V	T	.	.	.	.	.	G	D	V	N	K	L	S	K	M	Q	N	I	A	Q	T	R	E	D	F	G	S	M	L	L	N	.	.	.	.	T	F	Y	N	N	S	T	K	E	R	S	S	I	F	A	E	.	.	.	.	.	.	G	G	S	L	P	L	A	Y	A	V	A	K	A	N	G	D	E	A	A
Template Known Secondary structure							.	.	.	.	.	T															T	T									.	.	.	.					T												.	.	.	.	.	.	T	T												T	T
Template Predicted Secondary structure							.	.	.	.	.																										.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		710	.	.	.	.						.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.					740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.							.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.
		478	.	480	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	R	F	K	P	Y	T	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	A	F	L	E	Q	A	E
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		775	.	.	.	.	780	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions