Job Description P66948 Confidence 99.58% Date Thu Jan 5 12:10:22 GMT 2012 Rank 19 Aligned Residues 240 % Identity 8% Template c1tnoI_ PDB info PDB header:transferase Chain: I: PDB Molecule:geranylgeranyltransferase type i alpha subunit; PDBTitle: rat protein geranylgeranyltransferase type-i complexed with2 a ggpp analog and a kkksktkcvim peptide derived from k-3 ras4b Resolution 2.70 Å

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		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	E	I	L	L	T	H	P	L	P	E	S	R	L	A	D	A	R	N	R	A	N	Q	M	R	P	M	V	V	Q	S	S	E	D	F	Y	L	A	K	A	R	T	L	G	M	Y	N	S	G	R	N	Q	L	T	S	D	L	L	D	E	W	A	K	G	N	V	R	Q	Q	R	A	A	Q	Y	G	R	A	L	Q	A
Query Conservation
Alig confidence																					.	.	.	.	.	.																																													.	.
Template Conservation																					.	.	.	.	.	.																																													.	.
Template Sequence		A	E	W	A	D	I	D	P	V	P	Q	N	D	G	P	S	P	V	V	.	.	.	.	.	.	Q	I	I	Y	S	E	K	F	R	D	V	Y	D	Y	F	R	A	V	L	Q	R	D	E	R	S	E	R	A	F	K	L	T	R	D	A	I	E	L	N	A	A	N	Y	T	.	.	V	W	H	F	R	R	V	L	L
Template Known Secondary structure		G	G	G	T	T										S	S		S	S	.	.	.	.	.	.																					T	T																		T	T				.	.
Template Predicted Secondary structure																					.	.	.	.	.	.																																													.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.			.	.	.	.	.	.	.	140	.
		320	.	.	.	.		.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.		.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure							.																																																			.
Query SS confidence							.																																																			.
Query Sequence		M	E	A	N	K	.	Y	D	E	A	R	K	T	L	Q	P	L	L	A	A	E	P	G	N	A	W	Y	L	D	L	A	T	D	I	D	L	G	Q	N	K	A	N	E	A	I	N	R	L	K	N	A	R	D	L	R	T	.	N	P	V	L	Q	L	N	L	A	N	A	Y	L	Q	G	G	Q	P	Q	E	A	A	N
Query Conservation							.																																																			.
Alig confidence							.																																																			.
Template Conservation
Template Sequence		R	S	L	Q	K	D	L	Q	E	E	M	N	Y	I	I	A	I	I	E	E	Q	P	K	N	Y	Q	V	W	H	H	R	R	V	L	V	E	W	L	K	D	P	S	Q	E	L	E	F	I	A	D	I	L	N	Q	D	A	K	N	Y	H	A	W	Q	H	R	Q	W	V	I	Q	E	F	R	L	W	D	N	E	L	Q
Template Known Secondary structure				T	T																		T	T																T			T	T									T	T	T		T	T															T	T			T	T
Template Predicted Secondary structure
Template SS confidence
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.							.	.	.																			430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	N	R	Y	T	F	N	N	K	D	D	S	N	G	W	D	L	L	A	Q	A	E	A	A	L	N	N	R	.	.	.	.	.	.	D	Q	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	A	R	A	E	G	Y	A	L	A	G	R	L	D	Q	A	I	S	L	L	S	S	A
Query Conservation																															.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																															.	.	.	.	.	.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	V	D	Q	L	L	K	E	D	V	R	N	N	S	V	W	N	Q	R	H	F	V	I	S	N	T	T	G	Y	S	D	R	A	V	L	E	R	E	V	Q	Y	T	L	E	M	I	K	L	V	P	H	N	E	S	A	W	N	Y	L	K	G	I	L	Q	D	R	G	L	S	R	Y	P	N	L	L	N	Q	L	L	D
Template Known Secondary structure											T	T														T	T	T		S		S																			S														T	T	T		G	G	G										T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.										.	.	.	480	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.
Query Sequence		S	S	Q	V	K	L	G	S	L	Q	Q	A	R	Y	D	A	R	I	D	Q	L	R	Q	.	.	.	.	.	.	.	.	.	L	Q	E	R	F	K	P	Y	T	K	M
Query Conservation																									.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	Q	P	S	H	S	S	P	Y	L	I	A	F	L	V	D	I	Y	E	D	M	L	E	N	Q	C	D	N	K	E	D	I	L	N	K	A	L	E	L	C	E	I	L
Template Known Secondary structure		T	T	T	T	S																			T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions