Job Description P66948 Confidence 98.87% Date Thu Jan 5 12:10:22 GMT 2012 Rank 82 Aligned Residues 160 % Identity 14% Template c1ltxA_ PDB info PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Resolution 2.70 Å

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		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.											.	360	.	.	.	.	.	.	.	.	.	370	.	.		.	.	.	.	.	.
Predicted Secondary structure																	.																																		.	.	.	.	.	.	.	.	.	.															.
Query SS confidence																	.																																		.	.	.	.	.	.	.	.	.	.															.
Query Sequence		A	Q	Y	G	R	A	L	Q	A	M	E	A	N	K	Y	.	D	E	A	R	K	T	L	Q	P	L	L	A	A	E	P	G	N	A	W	Y	L	D	L	A	T	D	I	D	L	G	Q	N	K	.	.	.	.	.	.	.	.	.	.	A	N	E	A	I	N	R	L	K	N	A	R	D	L	.	R	T	N	P	V	L
Query Conservation																	.																																		.	.	.	.	.	.	.	.	.	.															.
Alig confidence																	.																																		.	.	.	.	.	.	.	.	.	.															.
Template Conservation
Template Sequence		S	A	T	Q	A	V	F	Q	K	R	Q	A	G	E	L	D	E	S	V	L	E	L	T	S	Q	I	L	G	A	N	P	D	F	A	T	L	W	N	C	R	R	E	V	L	Q	H	L	E	T	E	K	S	P	E	E	S	A	A	L	V	K	A	E	L	G	F	L	E	S	C	L	R	V	N	P	K	S	Y	G	T
Template Known Secondary structure													S				S	S	T	T												T	T												G	G	G	S	S	S	S	S		T	T	T																				S
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.			.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.
Predicted Secondary structure															.	.
Query SS confidence															.	.
Query Sequence		Q	L	N	L	A	N	A	Y	L	Q	G	G	Q	.	.	P	Q	E	A	A	N	I	L	N	R	Y	T	F	N	N	K	D	D	S	N	G	W	D	L	L	A	Q	A	E	A	A	L	N	N	R	D	Q	E	L	A	A	R	A	E	G	Y	A	L	A	G	R	L	D	Q	A	I	S	L	L	S	S	A	S	S	Q
Query Conservation															.	.
Alig confidence															.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		W	H	H	R	C	W	L	L	S	R	L	P	E	P	N	W	A	R	E	L	E	L	C	A	R	F	L	E	A	D	E	R	N	F	H	C	W	D	Y	R	R	F	V	A	A	Q	A	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	E	E	L	A	F	T	D	S	L	I	T	R
Template Known Secondary structure													S	S		T																T	T															T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.																	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		457	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.									.	.	.	.	.	480	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.
Query Sequence		V	K	L	G	S	L	Q	Q	A	R	Y	D	A	R	I	D	Q	L	.	.	.	.	.	.	.	.	R	Q	L	Q	E	R	F	K	P	Y	T	K
Query Conservation																				.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	F	S	N	Y	S	S	W	H	Y	R	S	C	L	L	P	Q	L	H	P	Q	G	R	L	P	E	N	V	L	L	K	E	L	E	L	V	Q	N
Template Known Secondary structure			S	S												T	T	T	T					S	S														T
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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