Job Description P21189 Confidence 99.56% Date Thu Jan 5 11:38:01 GMT 2012 Rank 25 Aligned Residues 211 % Identity 18% Template d2py5a2 SCOP info DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I Resolution 1.60

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		397	.	.	400	.	.	.	.			.	.	.	.	.	410	.	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.
Predicted Secondary structure										.	.									.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.									.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	A	S	P	G	G	Y	V	.	.	M	D	S	R	P	G	L	Y	.	D	S	V	L	V	L	D	Y	K	S	L	Y	P	S	I	I	R	T	F	L	I	D	P	V	G	L	V	E	G	M	A	Q	P	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation										.	.									.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.									.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Y	A	Y	R	G	G	F	T	W	L	N	D	R	F	K	E	K	E	I	G	E	G	M	V	F	D	V	N	S	L	Y	P	A	Q	M	Y	S	R	L	L	P	Y	G	E	P	I	V	F	E	G	K	Y	V	W	D	E	D	Y	P	L	H	I	Q	H	I	R	C	E	F	E	L	K	E	G	Y	I	P	T	I	Q
Template Known Secondary structure		T	T										G	G	G	B	T					S							T	T									S												S	S					T	T	S															T	T
Template Predicted Secondary structure
Template SS confidence
		224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
																																	448	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	H	S	T	E	G	F	L	D	A	W	F	S	R	E	K	H	C	L	P	E	I	V	T	N	I	W	H	G	R	D	E	A	K	R	Q	G	N	K	P	L	S	Q	A	L	K	I	I	M
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.
Template Conservation																																																																									.	.	.	.
Template Sequence		I	G	N	E	Y	L	K	S	S	G	G	E	I	A	D	L	W	L	S	N	V	D	L	E	L	M	K	E	H	Y	D	L	Y	N	V	E	Y	I	S	G	L	K	F	K	A	T	T	G	L	F	K	D	F	I	D	K	W	T	Y	I	K	T	T	S	E	G	A	I	K	Q	L	.	.	.	.	A	K	L	M	L
Template Known Secondary structure					S			S	B		T	T	S																																			S		T	T																						.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.
Template SS confidence
		304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.					.	.	.	.	.
		497	.	.	500	.	.	.	.	.	.	.																									.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	A	F	Y	G	V	L	G	T	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	R	F	F	D	P	R	L	A	S	S	I	T	M	R	G	H	Q	I	M	R	Q	T	K	A	L	I	E	A	Q	G	Y	D	V	I	Y	G	D	T	D	S	T	F	V	W
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																																																						.	.	.
Template Sequence		N	S	L	Y	G	K	F	A	S	N	P	D	V	T	G	K	V	P	Y	L	K	E	N	G	A	L	G	F	R	L	G	E	E	E	T	K	D	P	V	Y	T	P	M	G	V	F	I	T	A	W	A	R	.	.	.	Y	T	T	I	T	A	A	Q	A	C	Y	D	R	I	I	Y	C	D	T	D	S	I	H	L	T
Template Known Secondary structure			S	S					T			S	B										T	T	S	S										B																		.	.	.										T	T	T	T						T	T
Template Predicted Secondary structure																																																						.	.	.
Template SS confidence
		387	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.				.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.									.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.
Query Sequence		L	K	G	A	H	S	E	E	E	A	A	K	I	G	R	A	L	V	Q	H	V	N	A	W	W	A	E	T	L	Q	K	Q	R	L	T	S	A	L	E	L	E	Y	E	T	H	F	C	R	F	L	M	P	T	I	R	G	A	D	T	G	S	.	.	.	.	.	.	.	.	K	K	R	Y	A	G	L	I	Q	E	G
Query Conservation																																																															.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	T	E	I	P	D	V	I	K	D	I	V	D	P	K	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	Y	W	A	H	E	S	T	F	K	R	A	K	Y	L	R	Q	K	T	Y	I	Q	D	I	Y	M	K	E	V	D	G	K	L	V	E	G	S	P	D	D	Y	T	D
Template Known Secondary structure		S	S	S			G	G	G	G	G	G	B		S	S	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S															T	T												T	T						B	T	T	B		S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		464	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480																					.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
		625	.	.	.	.	630	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	Q	R	M	V	F	K	G	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	F	S	V	K	C	A	G	M
Template Known Secondary structure									T	T
Template Predicted Secondary structure
Template SS confidence
		524	.	.	.	.	.	530	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions