Return to main results Retrieve Phyre Job Id

Job DescriptionP21189
Confidence100.00%DateThu Jan 5 11:38:01 GMT 2012
Rank10Aligned Residues359
% Identity29%Templated1wn7a2
SCOP infoDNA/RNA polymerases DNA/RNA polymerases DNA polymerase I
Resolution2.75

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   368.370.........380.........390.... .....400.........410.........420.........430.........440..
Predicted Secondary structure 











.....



























Query SS confidence 


























. . . . .















































Query Sequence  GSVAAFGHLYFPRMHRAGYVAPNLGEV. . . . . PPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGM
Query Conservation        
 

         
 
     .....    
 

 
  
  
 
  
  


 







  


  
 
   
Alig confidence 


























.....















































Template Conservation 
 
  

 


         

              
 

 
  
  
 
  
  


 






   

   
     
Template Sequence  STGNLVEWFLLRKAYERNELAPNKPDEKELARRRQSYEGGYVKEPERGLWENIVYLDFRSLYPSIIITHNVSPDTLNREG
Template Known Secondary structure 
TT







T











STTTT

TTTBT
TT
Template Predicted Secondary structure 











































Template SS confidence 















































































   348.350.........360.........370.........380.........390.........400.........410.........420.......
 
   443......450.........460.........470.........480.... .....490.........500.........510.
Predicted Secondary structure 



















...........









Query SS confidence 









































. . . . . . . . . . .


























Query Sequence  AQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQG. . . . . . . . . . . NKPLSQALKIIMNAFYGVLGTTACRFF
Query Conservation                  
    



 

  

  
   

  ........... 
  
 



  

 

  
    

 
Alig confidence 


..




































...........


























Template Conservation     ..                



 

  

  
   
  

           
  
 



  

 

  
    
  
Template Sequence  CKE. . YDVAPQVGHRFCKDFPGFIPSLLGDLLEERQKIKKKMKATIDPIERKLLDYRQRAIKILANSYYGYYGYARARWY
Template Known Secondary structure 
S
..
TTT


SS

TS


TT
TT
TT
Template Predicted Secondary structure 


..

























Template SS confidence 















































































   428.430 .........440.........450.........460.........470.........480.........490.........500.....
 
   512.......520.........530....... ..540.........550.........560.........570.........580.........590
Predicted Secondary structure 

.


















Query SS confidence 

























.




















































Query Sequence  DPRLASSITMRGHQIMRQTKALIEAQ. GYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSAL
Query Conservation     

  

  

  
      

  .
  










         
       
   

               
Alig confidence 

























.

















.



















.........




Template Conservation      
  

  

  
      
    
  










    .            
   

  .........    
Template Sequence  CKECAESVTAWGREYITMTIKEIEEKYGFKVIYSDTDGFFATIPG. ADAETVKKKAMEFLKYINAK. . . . . . . . . LPGAL
Template Known Secondary structure 


TT
SS.

.........S
SS
Template Predicted Secondary structure 









.

.........



Template SS confidence 















































































   506...510.........520.........530.........540.........550 .........560.........570 .....
 
   591........600.........610.........620.........630.........640.........650.........660... ....
Predicted Secondary structure 






























...
Query SS confidence 








































































. . .



Query Sequence  ELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQ. . . EYVR
Query Conservation   

 
 

   

  

 
    




          
  



 



   
 
     

  

      ...    
Alig confidence 














........










...



































...



Template Conservation   

 
 

   

  ........





     ...
   

 
 



     
     

  

             
Template Sequence  ELEYEGFYERGFFVT. . . . . . . . KKKYAVIDEEG. . . KITTRGLEIVRRDWSEIAKETQARVLEALLKDGDVEKAVRIVK
Template Known Secondary structure 

S........TT
TT...


TT



SS
TTTTTS

Template Predicted Secondary structure 



........




...














Template SS confidence 















































































   576...580.........590 .........600. ........610.........620.........630.........640....
 
   668.670......... 680.........690.........700.........710.........720.........730.... .....740.....
Predicted Secondary structure 




.





















.






Query SS confidence 











.






















































.










Query Sequence  ETIDKLMAGELD. ARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTT. NGPEPLDYQRS
Query Conservation       
  
   .  


 
 
 
    
     


  
                  
 

 


  .           
Alig confidence 











.








............








..............










.










Template Conservation       
    
   



 
 
............


 

 
 .............. 
  
 


              
Template Sequence  EVTEKLSKYEVPPEKLVIHEQI. . . . . . . . . . . . PHVAVAKRL. . . . . . . . . . . . . . AATVISYIVLRAIPFDEFDPTKH
Template Known Secondary structure  TTSTTS
S
SGGG





............

STT..............













STTT

SSS
Template Predicted Secondary structure 







............
..............









Template SS confidence 















































































   645....650.........660...... ...670..... ....680.........690........
 
   746...750.........760.........770.....
Predicted Secondary structure 








Query SS confidence 





























Query Sequence  PLDYEHYLTRQLQPVAEGILPFIEDNFATL
Query Conservation   

  


  

 
   


          
Alig confidence 





























Template Conservation   

  


  

   
 

    
     
Template Sequence  KYDAEYYIENQVLPAVERILRAFGYRKEDL
Template Known Secondary structure 



TTTTTTTTTT

SS
GGGSS
Template Predicted Secondary structure 








Template SS confidence 





























   726...730.........740.........750.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions