Job Description P21189 Confidence 100.00% Date Thu Jan 5 11:38:01 GMT 2012 Rank 17 Aligned Residues 329 % Identity 19% Template d1tgoa1 SCOP info Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Resolution 2.50

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.	.	.	.	.
Query Sequence		F	I	L	T	R	H	W	R	D	T	P	Q	G	T	E	V	S	F	W	L	A	T	D	N	G	P	L	Q	V	T	L	A	P	Q	E	S	V	A	F	I	P	A	D	Q	V	P	R	A	Q	H	I	L	Q	G	E	Q	G	F	R	L	T	P	L	A	L	K	D	F	H	R	Q	.	.	.	.	.	.	.	.	.
Query Conservation																																																																									.	.	.	.	.	.	.	.	.
Alig confidence																																																																									.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	I	L	D	T	D	Y	I	T	E	D	G	K	P	V	I	R	I	F	K	K	E	N	G	E	F	K	I	D	Y	D	R	N	F	E	P	Y	I	Y	A	L	L	K	D	D	S	A	I	E	D	V	K	K	I	T	A	E	R	H	G	T	T	V	R	V	V	R	A	E	K	V	K	K	K	F	L	G	R	P	I
Template Known Secondary structure												T	T											T	T								S											S	S	G	G	G					T	T						T	T																T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																										.	.
Query SS confidence																										.	.
Query Sequence		P	V	Y	G	L	Y	C	R	A	H	R	Q	L	M	N	Y	E	K	R	L	R	E	G	G	.	.	V	T	V	Y	E	A	D	V	R	P	P	E	R	Y	L	M	E	R	F	I	T	S	P	V	W	V	E	G	D	M	H	N	G	T	I	V	N	A	R	L	K	P	H	P	D	Y	R	P	P	L	K	W	V	S
Query Conservation																										.	.
Alig confidence																										.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	V	W	K	L	Y	F	T	H	P	Q	D	V	P	A	I	R	D	K	I	K	E	H	P	A	V	V	D	I	Y	E	Y	D	I	P	F	A	K	R	Y	L	I	D	K	G	L	I	P	M	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	E	E	L	K	M	L	A
Template Known Secondary structure									S		T	T												S	T	T						S		S	S										T	T			S	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.																						.	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.
Query Sequence		I	D	I	E	T	T	R	H	G	E	L	Y	C	I	G	L	E	G	C	G	Q	R	I	V	Y	M	L	G	P	E	N	G	D	A	S	.	.	.	.	.	.	.	S	L	D	F	E	L	E	Y	V	A	S	R	P	Q	L	L	E	K	L	N	A	W	F	A	N	Y	D	P	D	V	I	I	G	W	N	V	V	Q
Query Conservation																																					.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.
Template Sequence		F	D	I	E	T	L	Y	H	E	G	.	.	.	.	.	.	E	E	F	A	E	G	P	I	L	M	I	S	Y	A	D	E	E	G	A	R	V	I	T	W	K	N	I	D	L	P	Y	V	D	V	V	S	T	E	K	E	M	I	K	R	F	L	K	V	V	K	E	K	D	P	D	V	L	I	T	Y	N	G	D	N
Template Known Secondary structure										S	S	.	.	.	.	.	.	S	S	T	T		S										T	T							S	S					T	T					S	S																		S					S	S	G	G	G
Template Predicted Secondary structure												.	.	.	.	.	.
Template SS confidence
		140	.	.	.	.	.	.	.	.	.							150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	L	R	M	L	Q	K	H	A	E	R	Y	R	L	P	L	R	L	G	R	D	N	S	E	L	E	W	R	E	H	G	F	K	N	G	V	F	F	A	Q	A	K	G	R	L	I	I	D	G	I	E	A	L	K	S	A	F	W	N	F	S	S	F	S	L	E	T	V	A	Q	E	L	L	G	E	G	K	S	I
Query Conservation
Alig confidence																																		.	.	.																							.
Template Conservation																																		.	.	.																							.
Template Sequence		F	D	F	A	Y	L	K	K	R	S	E	K	L	G	V	K	F	I	L	G	R	E	G	S	E	P	K	I	Q	R	M	G	.	.	.	D	R	F	A	V	E	V	K	G	R	I	H	F	D	L	Y	P	V	I	R	R	T	.	I	N	L	P	T	Y	T	L	E	A	V	Y	E	A	I	F	G	Q	P	K	E	K
Template Known Secondary structure		T												T	T						S	T	T	S									S	.	.	.	S	S						T	T	S													.				S													S	S
Template Predicted Secondary structure																																		.	.	.																							.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	N	P	W	D	R	M	D	E	I	D	R	R	F	A	E	D	K	P	A	L	A	T	Y	N	L	K	D	C	E	L	V	T	Q	I	F	H	K	T	E	I	M	P	F	L	L	E	R	A	T	V	N	G	L	P	V	D	R	H	G	G	S
Query Conservation
Alig confidence															.	.																									.	.
Template Conservation															.	.																									.	.
Template Sequence		V	Y	A	E	E	I	A	Q	A	W	E	T	G	.	.	E	G	L	E	R	V	A	R	Y	S	M	E	D	A	K	V	T	Y	E	L	G	K	E	F	.	.	F	P	M	E	A	Q	L	S	R	L	V	G	Q	S	L	W	D	V	S	R	S
Template Known Secondary structure															.	.	T	T																							.	.												T	S							T
Template Predicted Secondary structure															.	.																									.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.			.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.			.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions