Job Description P21189 Confidence 100.00% Date Thu Jan 5 11:38:01 GMT 2012 Rank 20 Aligned Residues 345 % Identity 13% Template d1s5ja1 SCOP info Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Resolution 2.40

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30		.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.			50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.				.	.	.	.	.	.
Predicted Secondary structure																												.																				.	.																								.	.	.
Query SS confidence																												.																				.	.																								.	.	.
Query Sequence		G	F	I	L	T	R	H	W	R	D	T	P	Q	G	T	E	V	S	F	W	L	A	T	D	N	G	.	P	L	Q	V	T	L	A	P	Q	E	S	V	A	F	I	P	A	D	Q	.	.	V	P	R	A	Q	H	I	L	Q	G	E	Q	G	F	R	L	T	P	L	A	L	K	D	.	.	.	F	H	R	Q	P	V
Query Conservation																												.																				.	.																								.	.	.
Alig confidence																												.																				.	.																								.	.	.
Template Conservation
Template Sequence		Y	F	L	L	Q	V	D	Y	D	G	K	K	G	K	A	V	C	K	L	F	D	K	E	T	Q	K	I	Y	A	L	Y	D	N	T	G	H	K	P	Y	F	L	V	D	L	E	P	D	K	V	G	K	I	P	K	I	V	R	D	P	S	F	D	H	I	E	T	V	S	K	I	D	P	Y	T	W	N	K	F	K	L
Template Known Secondary structure											T	T	T	T									T	T	T	T									S									S	S						T	T						T		T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.																.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.																.	.	.
Query Sequence		Y	G	L	Y	C	R	A	H	R	Q	L	M	N	Y	E	K	R	L	R	E	G	G	V	T	V	Y	E	A	D	V	R	P	P	E	R	Y	L	M	E	R	F	I	T	S	P	V	W	V	E	G	D	M	H	N	.	.	.	.	.	.	.	.	G	T	I	V	N	A	R	L	K	P	H	P	D	Y	R	.	.	.
Query Conservation																																																								.	.	.	.	.	.	.	.																.	.	.
Alig confidence																					.	.	.	.																																.	.	.	.	.	.	.	.																.	.	.
Template Conservation																					.	.	.	.
Template Sequence		T	K	I	V	V	R	D	P	L	A	V	R	R	L	R	N	D	V	P	.	.	.	.	K	A	Y	E	A	H	I	K	Y	F	N	N	Y	M	Y	D	I	G	L	I	P	G	M	P	Y	V	V	K	N	G	K	L	E	S	V	Y	L	S	L	D	E	K	D	V	E	E	I	K	K	A	F	A	D	S	D	E	M
Template Known Secondary structure							S	S								T	T	S	S	S	.	.	.	.				S		S	S											T			T	T	S						T	T																					T	T	T	S
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.					150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
																		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																		.	190	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	P	L	K	W	V	S	I	D	I	E	T	T	R	H	G	E	L	Y	C	I	G	L	E	G	C	G	Q	R	I	V	Y	M	L	G	P	E	N	G	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	L	D	F	E
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.
Template Sequence		T	R	Q	M	A	V	D	W	L	P	I	F	E	T	E	I	P	K	I	K	R	V	A	I	D	I	E	V	Y	T	P	V	K	G	.	R	I	P	D	S	Q	K	A	E	F	P	I	I	S	I	A	L	A	G	S	D	G	L	K	K	V	L	V	L	N	R	N	D	V	N	E	G	S	V	K	L	D	G	I	S
Template Known Secondary structure										T					S																	S	S	S	S	.					T	T	T			S										T	T	S									S	S										T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	Y	V	A	S	R	P	Q	L	L	E	K	L	N	A	W	F	A	N	Y	D	P	D	V	I	I	G	W	N	V	V	Q	F	D	L	R	M	L	Q	K	H	A	E	R	Y	R	L	P	L	R	L	G	R	D	N	S	E	L	E	W	R	E	H	G	F	K	N	G	V	F	F	A	Q	A	K	G	R	L	I
Query Conservation
Alig confidence																					.	.																																						.	.
Template Conservation																					.	.																																						.	.
Template Sequence		V	E	R	F	N	T	E	Y	E	L	L	G	R	F	F	D	I	L	L	.	.	E	Y	P	I	V	L	T	F	N	G	D	D	F	D	L	P	Y	I	Y	F	R	A	L	K	L	G	Y	F	P	E	E	I	P	I	D	V	A	.	.	G	K	D	E	A	K	Y	L	A	G	L	H	I	D	L	Y	K	F	F	F
Template Known Secondary structure						S	S													T	.	.	T		S					S	S	T	T	T	T											T	T	T			G	G	G		S					.	.	S	T	T					T	T	S										T
Template Predicted Secondary structure																					.	.																																						.	.
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.			.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																																																						.	.
Query SS confidence																																																																						.	.
Query Sequence		I	D	G	I	E	A	L	K	S	A	F	W	N	F	S	S	F	S	L	E	T	V	A	Q	E	L	L	G	E	G	K	S	I	D	N	P	W	D	R	M	D	E	I	D	R	R	F	A	E	D	K	P	A	L	A	T	Y	N	L	K	D	C	E	L	V	T	Q	I	.	.	F	H	K	T	E	I	M	P	F	L
Query Conservation																																																																						.	.
Alig confidence												.																													.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation												.																													.	.	.	.	.	.	.	.	.	.
Template Sequence		N	K	A	V	R	N	Y	A	F	E	.	G	K	Y	N	E	Y	N	L	D	A	V	A	K	A	L	L	G	T	S	K	V	D	T	L	I	S	F	L	.	.	.	.	.	.	.	.	.	.	D	V	E	K	L	I	E	Y	N	F	R	D	A	E	I	T	L	Q	L	T	T	F	N	N	D	L	T	M	K	L	I
Template Known Secondary structure		S							T	S	T	.	T			S	S		S															S	S		T	T	T		.	.	.	.	.	.	.	.	.	.																			T	T	T
Template Predicted Secondary structure												.																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		362	.	.	.	.	.	.	.	370	.		.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.											400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	E	R	A	T	V	N	G	L	P	V	D	R	H	G	G	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	F	S	R	I	S	R	L	G	I	E	E	L	T	R	T
Template Known Secondary structure																T	T
Template Predicted Secondary structure
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions