Job Description P21189 Confidence 100.00% Date Thu Jan 5 11:38:01 GMT 2012 Rank 12 Aligned Residues 346 % Identity 29% Template d1qhta2 SCOP info DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I Resolution 2.10

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		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.						.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.
Predicted Secondary structure																												.	.	.	.	.
Query SS confidence																												.	.	.	.	.
Query Sequence		G	S	V	A	A	F	G	H	L	Y	F	P	R	M	H	R	A	G	Y	V	A	P	N	L	G	E	.	.	.	.	.	V	P	P	H	A	S	P	G	G	Y	V	M	D	S	R	P	G	L	Y	D	S	V	L	V	L	D	Y	K	S	L	Y	P	S	I	I	R	T	F	L	I	D	P	V	G	L	V	E	G	M
Query Conservation																												.	.	.	.	.
Alig confidence																												.	.	.	.	.
Template Conservation
Template Sequence		S	T	G	N	L	V	E	W	F	L	L	R	K	A	Y	K	R	N	E	L	A	P	N	K	P	D	E	R	E	L	A	R	R	R	G	G	Y	A	G	G	Y	V	K	E	P	E	R	G	L	W	D	N	I	V	Y	L	D	F	R	S	L	Y	P	S	I	I	I	T	H	N	V	S	P	D	T	L	N	R	E	G
Template Known Secondary structure																		T	T															T	T	T							B						S											S	S									T	T		S	T	T	T	B	T		T	T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.												.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	Q	P	D	P	E	H	S	T	E	G	F	L	D	A	W	F	S	R	E	K	H	C	L	P	E	I	V	T	N	I	W	H	G	R	D	E	A	K	R	Q	G	N	.	.	.	.	.	.	.	.	.	.	.	K	P	L	S	Q	A	L	K	I	I	M	N	A	F	Y	G	V	L	G	T	T	A	C	R	F	F
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.
Template Sequence		C	K	E	Y	.	.	D	V	A	P	E	V	G	H	K	F	C	K	D	F	P	G	F	I	P	S	L	L	G	D	L	L	E	E	R	Q	K	I	K	R	K	M	K	A	T	V	D	P	L	E	K	K	L	L	D	Y	R	Q	R	A	I	K	I	L	A	N	S	F	Y	G	Y	Y	G	Y	A	K	A	R	W	Y
Template Known Secondary structure			S			.	.				T	T	T							S	S																								T																						T	T								T	T		S	S
Template Predicted Secondary structure						.	.
Template SS confidence
		428	.	430	.			.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.		.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590
Predicted Secondary structure																												.
Query SS confidence																												.
Query Sequence		D	P	R	L	A	S	S	I	T	M	R	G	H	Q	I	M	R	Q	T	K	A	L	I	E	A	Q	.	G	Y	D	V	I	Y	G	D	T	D	S	T	F	V	W	L	K	G	A	H	S	E	E	E	A	A	K	I	G	R	A	L	V	Q	H	V	N	A	W	W	A	E	T	L	Q	K	Q	R	L	T	S	A	L
Query Conservation																												.
Alig confidence																												.																			.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	K	E	C	A	E	S	V	T	A	W	G	R	E	Y	I	E	M	V	I	R	E	L	E	E	K	F	G	F	K	V	L	Y	A	D	T	D	G	L	H	A	T	I	P	G	.	A	D	A	E	T	V	K	K	K	A	K	E	F	L	K	Y	I	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L
Template Known Secondary structure																																					T	T							T	T	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																															.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.																.
		591	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	E	Y	E	T	H	F	C	R	F	L	M	P	T	I	R	G	A	D	T	G	S	K	K	R	Y	A	G	L	I	Q	E	G	D	K	Q	R	M	V	F	K	G	L	E	T	V	R	T	D	W	T	P	L	A	Q	Q	F	Q	Q	E	L	Y	L	R	I	F	R	N	E	P	Y	Q	E	Y	V	R	E	T	I
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.												.	.	.																																											.
Template Conservation																	.	.	.	.	.	.	.	.												.	.	.																																											.
Template Sequence		E	L	E	Y	E	G	F	Y	V	R	G	F	F	V	T	.	.	.	.	.	.	.	.	K	K	K	Y	A	V	I	D	E	E	G	.	.	.	K	I	T	T	R	G	L	E	I	V	R	R	D	W	S	E	I	A	K	E	T	Q	A	R	V	L	E	A	I	L	K	H	G	D	V	E	E	A	V	R	I	V	.
Template Known Secondary structure																	.	.	.	.	.	.	.	.	T	T							T	T		.	.	.						S		S				S																															.
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.												.	.	.																																											.
Template SS confidence
		576	.	.	.	580	.	.	.	.	.	.	.	.	.	590									.	.	.	.	.	.	.	.	.	600	.				.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
		671	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	L	M	A	G	E	L	D	A	R	L	V	Y	R	K	R	L	R	R	P	L	S	E	Y	Q	R	N	V	P	P	H	V	R	A	A	R	L	A	D	E	E	N	Q	K	R	G	R	P	L	Q	Y	Q	N	R	G	T	I	K	Y	V	W	T	T	N	G	P	E	P	L	D	Y	Q	R	S	P	L	D	Y	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																	.	.	.	.	.	.																		.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	E	V	T	L	V	I	H	E	Q	.	I	A	T	G	P	H	V	A	V	A	K	R	L	A	A	R	.	.	.	.	.	.	G	V	K	I	R	P	G	T	V	I	S	Y	I	V	L	K	G	.	.	.	.	.	D	R	A	I	P	A	D	E	F	E
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			T				B			B	.															T	T	.	.	.	.	.	.	T					T	T		B									.	.	.	.	.		S				T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.																	.	.	.	.	.	.																		.	.	.	.	.
Template SS confidence
																	644	.	.	.	.	.	650	.	.	.		.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.							670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.						.	.	.	690	.	.	.	.	.	.
		751	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Y	L	T	R	Q	L	Q	P	V	A	E	G	I	L	P	F	I	E	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Y	I	E	N	Q	V	L	P	A	V	E	R	I	L	K	A	F	G	Y
Template Known Secondary structure						T	T					S						T	T	T
Template Predicted Secondary structure
Template SS confidence
		731	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions