Job Description P21189 Confidence 100.00% Date Thu Jan 5 11:38:01 GMT 2012 Rank 13 Aligned Residues 332 % Identity 101% Template d1q8ia2 SCOP info DNA/RNA polymerases DNA/RNA polymerases DNA polymerase I Resolution 2.00

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	G	E	V	P	P	H	A	S	P	G	G	Y	V	M	D	S	R	P	G	L	Y	D	S	V	L	V	L	D	Y	K	S	L	Y	P	S	I	I	R	T	F	L	I	D	P	V	G	L	V	E	G	M	A	Q	P	D	P	E	H	S	T	E	G	F	L	D	A	W	F	S	R	E	K	H	C	L	P	E	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	L	G	E	V	P	P	H	A	S	P	G	G	Y	V	M	D	S	R	P	G	L	Y	D	S	V	L	V	L	D	Y	K	S	L	Y	P	S	I	V	R	T	F	L	I	D	P	V	G	L	V	E	G	M	A	Q	P	D	P	E	H	S	T	E	G	F	L	D	A	W	F	S	R	E	K	H	C	L	P	E	I
Template Known Secondary structure			T	T		S											B																T	T																						S		S	T	T	T					S	T	T					S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T	N	I	W	H	G	R	D	E	A	K	R	Q	G	N	K	P	L	S	Q	A	L	K	I	I	M	N	A	F	Y	G	V	L	G	T	T	A	C	R	F	F	D	P	R	L	A	S	S	I	T	M	R	G	H	Q	I	M	R	Q	T	K	A	L	I	E	A	Q	G	Y	D	V	I	Y	G	D	T	D	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	T	N	I	W	H	G	R	D	E	A	K	R	Q	G	N	K	P	L	S	Q	A	L	K	I	I	M	N	A	F	Y	G	V	L	G	T	T	A	C	R	F	F	D	P	R	L	A	S	S	I	T	M	R	G	H	Q	I	M	R	Q	T	K	A	L	I	E	A	Q	G	Y	D	V	I	Y	G	D	T	D	S	T
Template Known Secondary structure															T	T																				T		T	T	S	T	T																											T	T								S	S
Template Predicted Secondary structure
Template SS confidence
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	V	W	L	K	G	A	H	S	E	E	E	A	A	K	I	G	R	A	L	V	Q	H	V	N	A	W	W	A	E	T	L	Q	K	Q	R	L	T	S	A	L	E	L	E	Y	E	T	H	F	C	R	F	L	M	P	T	I	R	G	A	D	T	G	S	K	K	R	Y	A	G	L	I	Q	E	G	D	K	Q	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	W	L	K	G	A	H	S	E	E	E	A	A	K	I	G	R	A	L	V	Q	H	V	N	A	W	W	A	E	T	L	Q	K	Q	R	L	T	S	A	L	E	L	E	Y	E	T	H	F	C	R	F	L	M	P	T	I	R	G	A	D	T	G	S	K	K	R	Y	A	G	L	I	Q	E	G	D	K	Q	R	M
Template Known Secondary structure						S	S																												T	T	T																							T	T		T	T			S									T	T
Template Predicted Secondary structure
Template SS confidence
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.
		630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	F	K	G	L	E	T	V	R	T	D	W	T	P	L	A	Q	Q	F	Q	Q	E	L	Y	L	R	I	F	R	N	E	P	Y	Q	E	Y	V	R	E	T	I	D	K	L	M	A	G	E	L	D	A	R	L	V	Y	R	K	R	L	R	R	P	L	S	E	Y	Q	R	N	V	P	P	H	V	R	A	A	R	L	A
Query Conservation
Alig confidence								.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	F	K	G	L	E	.	.	T	T	D	W	T	P	L	A	Q	Q	F	Q	Q	E	L	Y	L	R	I	F	R	N	E	P	Y	Q	E	Y	V	R	E	T	I	D	K	L	M	A	G	E	L	D	A	R	L	V	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					S	S		.	.																					T	T																T	T	T	T	G	G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure								.	.																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		630	.	.	.	.	.			.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.
		710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	E	N	Q	K	R	G	R	P	L	Q	Y	Q	N	R	G	T	I	K	Y	V	W	T	T	N	G	P	E	P	L	D	Y	Q	R	S	P	L	D	Y	E	H	Y	L	T	R	Q	L	Q	P	V	A	E	G	I	L	P	F	I	E	D	N	F	A	T	L	M	T	G	Q	L	G	L	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	L	D	Y	E	H	Y	L	T	R	Q	L	Q	P	V	A	E	G	I	L	P	F	I	E	D	N	F	A	T	L	M	T	G	Q	L	G	L	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T							T	T	G	G	G	G	T														.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																																					745	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions