Job Description P21189 Confidence 100.00% Date Thu Jan 5 11:38:01 GMT 2012 Rank 21 Aligned Residues 328 % Identity 17% Template d1ih7a1 SCOP info Ribonuclease H-like motif Ribonuclease H-like DnaQ-like 3'-5' exonuclease Resolution 2.21

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	R	D	T	P	Q	G	T	E	V	S	F	W	L	A	T	D	N	G	P	L	Q	V	T	L	A	P	Q	E	S	V	A	F	I	P	A	D	Q	V	P	R	A	Q	H	I	L	Q	G	E	Q	G	F	R	L	T	P	L	A	L	K	D	F	H	R	Q	P	V	Y	G	L	Y	C	R	A	H	R	Q	L	M	N
Query Conservation
Alig confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	T	V	E	Q	I	G	D	S	I	F	E	R	Y	I	D	S	N	G	R	E	R	T	R	E	V	E	Y	K	P	S	L	F	A	H	C	P	E	S	Q	A	T	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	D	I	Y	G	K	P	C	T	R	K	L	F	A	N	M	R	D	A	S	Q
Template Known Secondary structure								T	T									T	T	S																			T	T	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		B		T	T	S		B							S	S
Template Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.																.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	K	R	L	R	E	G	G	V	T	V	Y	E	A	D	V	R	P	P	E	R	Y	L	M	E	R	F	I	T	S	P	V	W	V	E	G	D	M	H	N	G	T	I	V	N	A	R	L	K	P	H	P	D	Y	R	P	P	L	K	W	V	S	I	D	I	E	T	T	R	H	G	E	L	Y	C	I	G	L	E
Query Conservation
Alig confidence																		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Conservation																		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template Sequence		W	I	K	R	M	E	D	I	G	L	E	A	L	G	M	D	.	D	F	K	L	A	Y	L	S	D	T	Y	N	Y	E	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	D	H	T	K	I	R	V	A	N	F	D	I	E	V	T	S	P	D	G	.	.	.	F	P	E	P
Template Known Secondary structure										T				B	S			.											T		S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				G	G	G	S												S	S	S	.	.	.				T
Template Predicted Secondary structure																		.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.
Template SS confidence
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.		.	.	.	90	.	.	.	.	.	.	.	.	.	100	.																					.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.				.	.	.	.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190																																							.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	C	G	Q	R	I	V	Y	M	L	G	P	E	N	G	D	A	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	F	E	L	E	Y	V	A	S	R	P	Q	L	L	E	K	L	N	A	W	F	A
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	Q	A	K	H	P	I	D	A	I	T	H	Y	D	S	I	D	D	R	F	Y	V	F	D	L	L	N	S	P	Y	G	N	V	E	E	W	S	I	E	I	A	A	K	L	Q	E	Q	G	G	D	E	V	P	S	E	I	I	D	K	I	I	Y	M	P	F	D	N	E	K	E	L	L	M	E	Y	L	N	F	W	Q
Template Known Secondary structure		T	T			S										T	T	T	T											T	T													S		T	T	T	T										T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.				.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.
Predicted Secondary structure																																.	.	.																																									.
Query SS confidence																																.	.	.																																									.
Query Sequence		N	Y	D	P	D	V	I	I	G	W	N	V	V	Q	F	D	L	R	M	L	Q	K	H	A	E	R	Y	R	L	P	.	.	.	L	R	L	G	R	D	N	S	E	L	E	W	R	E	H	G	F	K	N	G	V	F	F	A	Q	A	K	G	R	L	I	I	D	G	I	E	A	L	K	S	.	A	F	W	N	F	S
Query Conservation																																.	.	.																																									.
Alig confidence																																.	.	.																																									.
Template Conservation
Template Sequence		Q	K	T	P	V	I	L	T	G	W	N	V	E	S	F	D	I	P	Y	V	Y	N	R	I	K	N	I	F	G	E	S	T	A	K	R	L	S	P	H	R	K	T	R	V	K	V	I	E	N	M	Y	G	S	R	E	I	I	T	L	F	G	I	S	V	L	D	Y	I	D	L	Y	K	K	F	S	F	T	N	Q	P
Template Known Secondary structure			S			S					T	T	T	T	T	T																			G	G	G	S	T	T	S										S	S									T	T														S	S				S
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	F	S	L	E	T	V	A	Q	E	L	L	G	E	G	K	S	I	D	N	P	W	D	R	M	D	E	I	D	R	R	F	A	E	D	K	P	A	L	A	T	Y	N	L	K	D	C	E	L	V	T	Q	I	F	H	K	T	E	I	M	P	F	L	L	E	R	A	T	V	N	G	L	P	V	D	R	H	G	G	S
Query Conservation
Alig confidence																						.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		S	Y	S	L	D	Y	I	S	E	F	E	L	N	V	G	K	L	K	Y	D	.	.	.	.	.	G	P	I	S	K	L	R	E	S	N	H	Q	R	Y	I	S	Y	N	I	I	D	V	Y	R	V	L	Q	I	D	A	K	R	Q	F	I	N	L	S	L	D	M	G	Y	Y	A	K	I	Q	I	Q	S	V	F	S	P
Template Known Secondary structure				S									T								S	.	.	.	.	.	S		G	G	G																																									T	S		G	G	G	G	G
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	A	A	F	G	H	L	Y	F	P	R	M	H	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	K	T	W	D	A	I	I	F	N	S	L	K	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions