Job Description P21189 Confidence 97.68% Date Thu Jan 5 11:38:01 GMT 2012 Rank 31 Aligned Residues 145 % Identity 13% Template c1njzA_ PDB info PDB header:transferase/dna Chain: A: PDB Molecule:dna polymerase i; PDBTitle: cytosine-thymine mismatch at the polymerase active site Resolution 2.00 Å

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		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220		.	.	.	.	.	.	.	.	.	230	.
Predicted Secondary structure																																																																						.
Query SS confidence																																																																						.
Query Sequence		V	S	I	D	I	E	T	T	R	H	G	E	L	Y	C	I	G	L	E	G	C	G	Q	R	I	V	Y	M	L	G	P	E	N	G	D	A	S	S	L	D	F	E	L	E	Y	V	A	S	R	P	Q	L	L	E	K	L	N	A	W	F	A	N	Y	D	P	D	V	I	.	I	G	W	N	V	V	Q	F	D	L	R
Query Conservation																																																																						.
Alig confidence													.	.	.	.	.	.	.	.	.																		.	.	.	.	.																				.	.						.						.
Template Conservation													.	.	.	.	.	.	.	.	.																		.	.	.	.	.																				.	.												.
Template Sequence		A	A	L	V	V	E	V	V	E	E	N	.	.	.	.	.	.	.	.	.	Y	H	D	A	P	I	V	G	I	A	V	V	N	E	H	G	R	.	.	.	.	.	F	F	L	R	P	E	T	A	L	A	D	P	Q	F	V	A	W	L	G	.	.	D	E	T	K	K	K	S	M	F	D	S	.	K	R	A	A	V
Template Known Secondary structure										S	S	S	.	.	.	.	.	.	.	.	.		T	T											T	T			.	.	.	.	.									T	T										.	.		T	T	S					S	S		.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.																		.	.	.	.	.																				.	.												.
Template SS confidence
		316	.	.	.	320	.	.	.	.	.	.										.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.						.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.			.	.	.	.	.	.	.	370	.	.	.		.	.	.	.	.
		232	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	L	Q	K	H	A	E	R	Y	R	L	P	L	R	L	G	R	D	N	S	E	L	E	W	R	E	H	G	F	K	N	G	V	F	F	A	Q	A	K	G	R	L	I	I	D	G	I	E	A	L	K	S	A	F	W	N	F	S	S	F	S	L	E	T	V	A	Q	E	L	L	G	E	G	K	S	I	D	N	P	W
Query Conservation
Alig confidence						.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																																	.	.
Template Conservation						.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																																	.	.
Template Sequence		A	L	K	W	.	.	.	.	K	G	I	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	C	G	V	.	S	F	D	L	L	L	A	A	Y	L	L	D	P	A	Q	G	V	D	D	V	A	A	A	A	K	M	K	Q	Y	E	A	V	.	.	R	P	D	E
Template Known Secondary structure						.	.	.	.	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.													G	G	G				S							T	T	T			S	S	.	.
Template Predicted Secondary structure						.	.	.	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.																																	.	.
Template SS confidence
		379	380	.	.					.	.	.	.																										.	.	.	390		.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.			.	.	.	.
		312	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	M	D	E	I	D	R	R	F	A	E	D	K	P	A	L	A	T	Y	N	L	K	D	C	E	L	V	T	Q	I	F	H	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	V	Y	G	K	G	A	K	R	A	V	P	D	E	P	V	L	A	E	H	L	V	R	K	A	A	A	I	W	E	L	E	R	P	F
Template Known Secondary structure						S	G	G	G
Template Predicted Secondary structure
Template SS confidence
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions