Job Description P37327 Confidence 3.54% Date Thu Jan 5 11:55:13 GMT 2012 Rank 42 Aligned Residues 206 % Identity 11% Template c2d57A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:aquaporin-4; PDBTitle: double layered 2d crystal structure of aquaporin-4 (aqp4m23) at 3.2 a2 resolution by electron crystallography Resolution 3.20 Å

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		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.
Predicted Secondary structure																	.																																																	.	.	.	.
Query SS confidence																	.																																																	.	.	.	.
Query Sequence		E	R	D	A	M	A	L	L	W	S	A	I	A	A	G	.	L	S	M	G	A	S	L	L	A	K	G	I	F	Q	V	E	L	E	G	V	P	G	S	F	L	L	E	N	L	G	Y	T	F	G	F	I	I	V	I	M	A	R	Q	Q	L	F	T	E	.	.	.	.	N	T	V	T	A	V	L	P	V	M	Q	K
Query Conservation																	.																																																	.	.	.	.
Alig confidence																	.																																														.	.		.	.	.	.
Template Conservation																																																															.	.
Template Sequence		T	Q	A	F	W	K	A	V	T	A	E	F	L	A	M	L	I	F	V	L	L	S	V	G	S	T	I	N	W	G	G	S	E	N	P	L	P	V	D	M	V	L	I	S	L	C	F	G	L	S	I	A	T	M	V	Q	C	F	G	H	I	.	.	S	G	G	H	I	N	P	A	V	T	V	A	M	V	C	T	R
Template Known Secondary structure			T																												S	S	S	S				T																									.	.			S			S											S
Template Predicted Secondary structure																																																															.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		128	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	T	M	S	N	V	G	L	L	I	R	L	W	G	V	V	L	L	G	N	I	L	G	T	G	I	A	A	W	A	F	E	Y	M	P	I	F	N	E	E	T	R	D	A	F	V	K	I	G	M	D	V	M	K	N	T	P	S	E	M	F	A	N	A	I	I	S	G	W	L	I	A	T	M	V	W	M	F	P	A
Query Conservation
Alig confidence				.	.																																			.	.	.	.	.	.	.
Template Conservation				.	.																																			.	.	.	.	.	.	.
Template Sequence		K	I	.	.	S	I	A	K	S	V	F	Y	I	T	A	Q	C	L	G	A	I	I	G	A	G	I	L	Y	L	V	T	P	P	S	V	V	G	G	.	.	.	.	.	.	.	L	G	V	T	T	V	H	G	N	L	T	A	G	H	G	L	L	V	E	L	I	I	T	F	Q	L	V	F	T	I	F	A	S	C	D
Template Known Secondary structure			S	.	.																												T	T	T	G	G	G		.	.	.	.	.	.	.	S	S						S																											S
Template Predicted Secondary structure				.	.																																			.	.	.	.	.	.	.
Template SS confidence
		109	110			.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.								.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		208	.	210								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence		A	G	A	.	.	.	.	.	.	.	A	K	I	V	V	I	I	L	M	T	W	L	I	A	L	G	D	T	T	H	I	V	V	G	S	V	E	I	L	Y	L	V	F	N	G	T	L	H	W	S	D	F	I	W	P	F	A	L	P	T	L	A	G	N	I	C	G	G	T	F	I
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.																																														.						.
Template Conservation																																																									.						.
Template Sequence		S	K	R	T	D	V	T	G	S	V	A	L	A	I	G	F	S	V	A	I	G	H	L	F	A	I	N	Y	T	G	A	S	M	N	P	A	R	S	F	G	P	A	V	I	M	G	N	W	E	N	H	W	I	Y	W	.	V	G	P	I	I	.	G	A	V	L	A	G	A	L	Y
Template Known Secondary structure		S	S		S				S																																									T	T	T					.						.
Template Predicted Secondary structure																																																									.						.
Template SS confidence
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.		240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions