Job Description P37327 Confidence 37.39% Date Thu Jan 5 11:55:13 GMT 2012 Rank 14 Aligned Residues 211 % Identity 12% Template c2b5fD_ PDB info PDB header:transport protein,membrane protein Chain: D: PDB Molecule:aquaporin; PDBTitle: crystal structure of the spinach aquaporin sopip2;1 in an2 open conformation to 3.9 resolution Resolution 3.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.					.	.	.	.	120	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence		E	R	D	A	M	A	L	L	W	S	A	I	A	A	G	L	S	M	G	A	S	L	L	A	K	G	I	F	Q	V	E	L	E	G	V	P	G	S	F	L	L	E	N	L	G	Y	T	F	G	F	I	I	V	I	M	A	R	Q	Q	L	F	T	E	.	.	.	.	N	T	V	T	A	V	L	P	V	M	Q	K	P
Query Conservation																																																																	.	.	.	.
Alig confidence																																																																	.	.	.	.
Template Conservation
Template Sequence		L	W	S	F	W	R	A	A	I	A	E	F	I	A	T	L	L	F	L	Y	I	T	V	A	T	V	I	G	H	S	K	E	T	V	V	C	G	S	V	G	L	L	G	I	A	W	A	F	G	G	M	I	F	V	L	V	Y	C	T	A	G	I	S	G	G	H	I	N	P	A	V	T	F	G	L	F	L	A	R	K
Template Known Secondary structure		S	G	G	G	T	T																									T		S	S	T	T		S																						T	T	T	T					S									T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	S	N	V	G	L	L	I	R	L	W	G	V	V	L	L	G	N	I	L	G	T	G	I	A	A	W	A	F	E	Y	M	P	I	F	N	E	E	T	R	D	A	F	V	K	I	G	M	D	V	M	K	N	T	P	S	E	M	F	A	N	A	I	I	S	G	W	L	I	A	T	M	V	W	M	F	P	A	A
Query Conservation
Alig confidence			.	.						.	.	.	.																					.	.
Template Conservation			.	.						.	.	.	.																					.	.
Template Sequence		V	.	.	S	L	L	R	A	.	.	.	.	L	V	Y	M	I	A	Q	C	L	G	A	I	C	G	V	G	L	V	K	A	.	.	F	M	K	G	P	Y	N	Q	F	G	G	G	A	N	S	V	A	L	G	Y	N	K	G	T	A	L	G	A	E	I	I	G	T	F	V	L	V	Y	T	V	F	S	A	T	D	P
Template Known Secondary structure		S	.	.						.	.	.	.																					.	.		S							S	G	G	G						T	T	S																							T
Template Predicted Secondary structure			.	.						.	.	.	.																					.	.
Template SS confidence
		114			.	.	.	.	.					120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		209	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure						.	.	.	.	.																													.
Query SS confidence						.	.	.	.	.																													.
Query Sequence		G	A	A	K	.	.	.	.	.	I	V	V	I	I	L	M	T	W	L	I	A	L	G	D	T	T	H	I	V	V	G	S	V	E	I	L	Y	.	L	V	F	N	G	T	L	H	W	S	D	F	I	W	P	F	A	L	P	T	L	A	G	N	I	C	G	G	T	F	I
Query Conservation						.	.	.	.	.																													.
Alig confidence						.	.	.	.	.																													.
Template Conservation
Template Sequence		K	H	V	P	I	L	A	P	L	P	I	G	F	A	V	F	M	V	H	L	A	T	I	P	I	T	G	T	G	I	N	P	A	R	S	F	G	A	A	V	I	F	N	S	N	K	V	W	D	D	Q	W	I	F	W	V	G	P	F	I	G	A	A	V	A	A	A	Y	H
Template Known Secondary structure									S															T	T	T	T	S																								T	T
Template Predicted Secondary structure
Template SS confidence
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions